Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq255 111 2e-19 seq21 111 2e-19 seq13 111 2e-19 seq1111 102 8e-17 seq69 91.5 1e-13 seq46 89.7 5e-13 seq49 86.0 6e-12 seq96 84.2 2e-11 >seq255 Length=264719 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134495 GAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTG 134554 ||| |||| | | ||||| || ||||| || || || ||||||||||| | |||||| Sbjct 227501 GAGGCGCAGCCCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTG 227560 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||||||||| ||||||||| |||||||||||| ||| | |||||||| Sbjct 227561 GCCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTC 227620 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || ||||| |||||| || ||||| | || || | ||| || Sbjct 227621 CTTGTCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGT 227680 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || |||||||| Sbjct 227681 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 >seq21 Length=29177037 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||| ||||| || || ||||| |||||||| ||||||||||| | ||| || | Sbjct 16234647 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTACG 16234705 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || ||||| || ||||| ||||| | ||| ||||| || || || ||||| Sbjct 16234706 TCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTC 16234765 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | || || || | ||| || |||||||| Sbjct 16234766 CTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGT 16234825 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| |||||||| ||||| ||| Sbjct 16234826 GATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 16234868 >seq13 Length=31987310 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||| ||||| || || ||||| |||||||| ||||||||||| | ||| || | Sbjct 25852500 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTACG 25852558 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || ||||| || ||||| ||||| | ||| ||||| || || || ||||| Sbjct 25852559 TCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTC 25852618 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | || || || | ||| || |||||||| Sbjct 25852619 CTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGT 25852678 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| |||||||| ||||| ||| Sbjct 25852679 GATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 25852721 >seq1111 Length=9394 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134495 GAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTG 134554 ||| |||| | | || || || ||||| || || || ||||||||||| | |||| | Sbjct 100 GAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCG 159 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||||||||| |||||||||| | ||||||| || ||||| |||||||| Sbjct 160 GCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTC 219 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || ||||| ||||| || | ||||| | || || ||||| || Sbjct 220 CTTGTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGT 279 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 280 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq69 Length=11345371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| |||| ||| ||||| || || ||||| ||| |||| ||||||||||| | | Sbjct 5552186 CCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGAC 5552127 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || || || ||||| || ||||||||||| | ||| |||||||| | Sbjct 5552126 AAAGCACATCCA-TCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTG 5552068 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || || | || ||||| || | ||| || || | ||| || Sbjct 5552067 AATTCCTTCTTTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGAC 5552008 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || ||||| || || || || | | ||||| || || || | ||| ||| Sbjct 5552007 CTCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACATCTTG 5551956 >seq46 Length=16750451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || | ||| || ||||||||||| || |||||||||||| Sbjct 1815919 CCACCCCTCAGGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1815860 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 1815859 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGG 1815800 Query 134607 ATGCCTTCTTTTTC 134620 ||||| || || || Sbjct 1815799 ATGCCCTCCTTATC 1815786 >seq49 Length=15761451 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA-ACGGTGTGAGAGT 134559 || ||| ||||| || ||||| || || || |||||||||| || | | |||| | | Sbjct 14388149 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGT-GCGAGAGGGTGCGGCCAT 14388207 Query 134560 CGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTT 134619 | || ||||||||||| ||||| |||| | ||| ||| |||||||| |||| || || | Sbjct 14388208 CTTCCAGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATGCACTCCTTGT 14388267 Query 134620 CTTGAATTTTTTGTTTGAC 134638 | || ||||| |||||| Sbjct 14388268 CCTGGATTTTGGCTTTGAC 14388286 >seq96 Length=7287561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| || || || ||||| || | || ||||||| || | |||| | Sbjct 3530330 CGCAGCACCAGATGCAGGGTGGACTCTTCCTGGATGTTGTGGTTCGAGAGGGTGCGGCCA 3530389 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 | || ||||||||||| |||||||||| |||||| || || ||| | |||||||| || Sbjct 3530390 CCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGATGGTCTGGCAGGATGCCTTCCTTG 3530449 Query 134619 TCTTGAATTTTTTG-TTTGACCGCGTCCAATGTGTC 134653 || || |||||| | ||||| ||||||||||| Sbjct 3530450 TCCTGGATTTTTGGCTTTGATATTCTCCAATGTGTC 3530485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505317251969400