Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq67 116 5e-21 >seq67 Length=11548157 Score = 116 bits (128), Expect = 5e-21 Identities = 192/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 214604 GAAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTA 214663 ||||||||| || ||||||||||| | |||||||| ||||| ||| | || || || Sbjct 1431772 GAAGGAGATGGCCTCGGAGCTGGAGGCGCTGTACGGTGACATCGACGCCATGGAGCTGTA 1431831 Query 214664 CGCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGA 214723 | | | |||| | || || || | || || |||||| |||| || | | | || Sbjct 1431832 CCCCGCCCTCCTGGTGGAGAAGCCCCGGCCGGACGCCATCTTCGGGGAGACCATGGTGGA 1431891 Query 214724 GTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTA 214783 | |||||| || |||||||||| ||| ||| || ||| ||||||||| || | || Sbjct 1431892 GCTGGGGGCCCCCTTCTCCCTGAAGGGCCTCATGGGCAACCCCATCTGCTCGCCCGAGTA 1431951 Query 214784 CTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCT 214843 |||||| | | ||| |||| || | | | ||| ||||| | | ||| |||| Sbjct 1431952 CTGGAAGCCGAGCACCTTCGGGGGCGAGGTGGGCTTCCGGATCGTCAACACCGCCTCCCT 1432011 Query 214844 TCAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCG 214880 ||||| || ||||| |||||||||||| || ||| Sbjct 1432012 CCAGTCCCTGATCTGCCACAACGTCAAGGGCTGCCCG 1432048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723224658592800