Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq61 268 1e-66 seq119 136 5e-27 seq37 116 5e-21 seq28 107 3e-18 >seq61 Length=12918418 Score = 268 bits (296), Expect = 1e-66 Identities = 617/919 (67%), Gaps = 19/919 (2%) Strand=Plus/Plus Query 39267 TTCTTTAAAAGTCAACATCTAAAG----AAAAATGATTATCTTCTTGT---GACATAACT 39319 ||||||| ||||| |||| || | ||||| ||||||| | | ||||| ||| Sbjct 2373265 TTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCACT 2373324 Query 39320 CCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 39379 ||||| | || || || | || | ||||| || || ||||| || ||||||| ||| Sbjct 2373325 CCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAG 2373384 Query 39380 ATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCT 39439 ||||| |||||||| ||||| ||||| | | | | || | || |||| || Sbjct 2373385 ATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCTCC 2373444 Query 39440 GAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCT 39499 || | ||| || | |||||||| || || |||||| | || ||||| || Sbjct 2373445 AGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCCCA 2373504 Query 39500 ATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTT 39559 ||||| || || || | ||||| || || ||||| | ||| || | || || ||| Sbjct 2373505 ATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTGAG 2373563 Query 39560 -ATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA 39618 ||||| | | ||| || || ||| || | || |||||| ||||| | ||| Sbjct 2373564 GATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGGCA 2373623 Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 || |||||||| || | |||||||| || ||||| | ||| || ||||||||||| || Sbjct 2373624 AGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCC 2373683 Query 39679 AGGCATTAGACC-ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737 |||||| || || | ||||| ||||| ||||| | ||||| || ||||||||||||| Sbjct 2373684 AGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGA 2373743 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---A 39794 | ||||| ||||| ||||| || | | | ||||| || | || | ||| | Sbjct 2373744 TCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCTCTCTGTGTCCAA 2373802 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 ||| | | ||||| || || |||||||| ||||||||||||||||| |||||||| | Sbjct 2373803 TCC-CCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTGA 2373861 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 |||| | | || | | ||||||| || ||||| | | ||||| ||||||| Sbjct 2373862 AGAGGTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGTACATTT 2373921 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | || || ||||||| | || | ||||| || || ||||| | ||||| || || | Sbjct 2373922 CAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTGTGATCT 2373981 Query 39975 GTACCTCTGAACAAAATCTT---TCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||| | ||| ||| || ||| || ||| | || || || || |||| Sbjct 2373982 GAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-GGGGCGG 2374040 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 | || || |||| | || | || || | || ||||| | | | || || Sbjct 2374041 CGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGTCCCGGT 2374100 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 | ||| || || || | | ||||| || || ||||| || |||||||| ||||| Sbjct 2374101 GCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGGCCTTCC 2374160 Query 40152 TGTACATGTTCCATATATC 40170 ||||||| | ||| ||||| Sbjct 2374161 TGTACATCTGCCAGATATC 2374179 >seq119 Length=4927305 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || ||||| ||||| ||||||||||| || || ||||| ||||| | || Sbjct 3059024 TGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATGGAC 3058965 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| ||||| | | ||||| Sbjct 3058964 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAACTG 3058905 Query 68839 TTTCTAAGACCAT 68851 ||||||| ||||| Sbjct 3058904 TTTCTAATACCAT 3058892 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| |||||||||||||| || || || | || || || || || | Sbjct 3027864 CACCACTGAATACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACTGCAATCCTTGCGGCCA 3027805 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | |||||||||||||| || | || || | || || ||| | || ||||| || |||| Sbjct 3027804 GGATAGCATAGTCAGGGTGCTTGGTGGTCAAGGTCGCAGCTGTCTCGGCAGCCAAAGTAT 3027745 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || |||||| ||||| || |||||||||| Sbjct 3027744 CTAGTTCCACAGTGGTGACCCCACTATATAATCCTTGGATTACTTTCATGG 3027694 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 3064584 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTCGGCTCAGCAATATGGATGT 3064525 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || |||||||| |||||||||||||| || || ||||| || | || | | Sbjct 3064524 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTGTCAGCTGCCATCTTGAGAACTGTTT 3064465 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||| | |||||| ||| ||||| | ||||| |||| Sbjct 3064464 TCTGTGATATTTCCCACACGGTCTTATAAAGTTGTTTCAGGTCATCAGGAA 3064414 Score = 89.7 bits (98), Expect = 7e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| ||| || || || | || |||||| ||| | || | ||| |||||||| || Sbjct 3038479 CCAGCAATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCTCCAGCA 3038420 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 || || || || ||||| |||| || |||||||| || || || |||||||||||| Sbjct 3038419 GACTTGGAAATCAGTGCACATTGTTTTAAAGTGTCATAAATGCCTTCAATGCTATCATCT 3038360 Query 69949 ATCATGTTAAGAAGAAAACAGCTA 69972 |||| | ||||| ||||||||| Sbjct 3038359 TTCATACTGAGAAGGAAACAGCTA 3038336 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 3033757 GTACCAGCATTGAAGAGAGTCGGAGAGGCATGTGTAAACCACTTCTCAGAAAGAAGGTTG 3033698 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || ||||| | |||||||| | | || | ||||||| Sbjct 3033697 TATGTTTCAATGGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3033638 Query 70111 ATATGCTGAGGTCGTTC 70127 ||||| || |||| ||| Sbjct 3033637 ATATGTTGTGGTCTTTC 3033621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 |||||||| | ||||||| || ||||| ||||||||||| ||||||| |||||| Sbjct 3050490 TTTTCATACCTTTCATATAGCTTCTCAAATTCTTCTCCCCAAACCTCATCCAGACCAGGA 3050431 Query 69553 CATTCATTTGGACACATCAATGACCA 69578 || ||||| ||||||||||| ||||| Sbjct 3050430 CACTCATTCGGACACATCAAAGACCA 3050405 >seq37 Length=21270769 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||| || ||||||||||| |||||||| || || | |||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||| | |||||||| |||||||||||||| ||||| ||||| || || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 39759 CAAC 39762 | || Sbjct 14837933 CCAC 14837936 >seq28 Length=26224161 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 21882816 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCTTT 21882757 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||| || |||||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 21882756 AGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGCC 21882697 Query 39761 AC 39762 || Sbjct 21882696 AC 21882695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686798508205800