Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq61 205 7e-48 seq37 109 4e-19 seq28 100 2e-16 >seq61 Length=12918418 Score = 205 bits (226), Expect = 7e-48 Identities = 485/722 (67%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTC---GGTTTGCGCAAGAAGTTCAATTACC 43929 |||||| || |||| ||| || |||| | ||||| ||||||||||| | | Sbjct 2374034 CGACGGCATCGTCACTGAGAACCTGGTCGAGCTAAGGTTTAGCCAAGAAGTTCAGATCAC 2373975 Query 43930 AGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 |||||| || ||||| ||||| ||||||| ||||| ||||| | || || |||||||| Sbjct 2373974 AGAAGCCCGCTGTTTCTATGGCTTTCAAAATGCCACGGAAAACAGACACTCTGAAATGTA 2373915 Query 43990 CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGC 44049 |||||| || | ||||| |||| ||||||| | | | | | | || ||||| Sbjct 2373914 CAGTCTCCTCACTGATACTTACAATAAAGATGCCAAAGGAAGGGAAAACCTCTTCAATGC 2373855 Query 44050 GATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATT 44108 || |||||| | ||| | || | || || ||||||| |||| ||| | | Sbjct 2373854 TATTGAAACAATGCCTTGTGTCAAGAAGAAGGCGGACTGGG-CCTTGTGGGGATTGGACA 2373796 Query 44109 CA-AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 || | | || | |||||||| | | || ||||| | |||||||| || |||||| Sbjct 2373795 CAGAGAGGCTCCCTAGGAGAACGTGTCCTGGCTTTTGCGGCAGTGGAAGGGATCTTCTTT 2373736 Query 44168 TCAGGATCGTTTGCGGCCATATTTTGG-TTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || || |||||||| | ||||| ||| | ||| ||| |||| |||||||||| | || Sbjct 2373735 TCTGGCTCGTTTGCATCGATATTCTGGCTGAAAAAAAGGAGGACTGATGCCTGGCCTCAC 2373676 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 ||||| ||||| | || || | ||||| || || || || || ||||||||| || | Sbjct 2373675 ATTTTCCAATGAACTTATTAGCAGGGATGAGGGTTTCCACTGTGACTTTGCTTGCCTGAT 2373616 Query 44287 ACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGA 44346 | | ||||| | || | || ||||| ||| | | | ||| || | | Sbjct 2373615 GTTCAAACATCTA--ATAC-ACAAACCTTCGGAGCAGAGAGTGAAAGAAATAATCCTCAG 2373559 Query 44347 GGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 || || || |||||||| || || | || || || ||||| ||| | || || || Sbjct 2373558 TGCTGTTAAAATAGAACAGGAGTTCCTTACTGAGGCCTTGCCTGTGAATCTCATTGGGAT 2373499 Query 44407 GAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC 44465 ||| || | | || ||||| || |||||||||| | | || | | | |||| | Sbjct 2373498 GAACTGCA-TGTTAATGAAACAGTATATTGAATTTGTGCCTGACAGACTTATGCTGGAGC 2373440 Query 44466 TGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525 | |||| | || | | ||| |||| || ||||| || ||||| ||||| || Sbjct 2373439 TAGGTTTCAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTCATGGAGAATATCTCAC 2373380 Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCA 44585 ||||||| || || ||||| ||||| || | || |||| |||||| | ||||| || | Sbjct 2373379 TGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAAGAGAGTATCAGAGGATGGGAGTGA 2373320 Query 44586 TG 44587 || Sbjct 2373319 TG 2373318 >seq37 Length=21270769 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 14839991 CAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 14839932 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||||||||| || || ||||| ||||| |||||| Sbjct 14839931 ATACACTCTGAAATGTACAGTCTCCTCATTGATACTTACATTAAAGAT 14839884 >seq28 Length=26224161 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| |||||||||||||| || ||| ||||||| || ||| Sbjct 21854781 CCAGAAGCTCGCTGTTTCTATGGCTTTCAAATTGCCATCGAGAATGTTCATTCAGAGATG 21854840 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||| | || ||||| || ||||||| |||| Sbjct 21854841 TACAGTTTGCTAATAGACACTTACATCAGAGAT 21854873 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| ||||| ||||||||||| ||||| ||||| || |||||||| || ||||| | Sbjct 21896962 AAAACCCCTTTGACTTTATGGAAAACATTTCTTTGGAGGGGAAAACAAATTTCTTTGAGA 21897021 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 | || ||| |||||||||||| Sbjct 21897022 AGCGGGTTTCAGAATATCAGCG 21897043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397393778884225