Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1111 95.1 1e-14 seq255 82.4 6e-11 >seq1111 Length=9394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| | ||| | |||| ||| ||| | || || ||||| || || |||||||| Sbjct 90 TGCCCCTGCGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCG 149 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | || || |||||||| || || |||| ||| |||| || ||||||| Sbjct 150 AGAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCG 209 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||| ||| ||| | | || | ||||| ||| || | Sbjct 210 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTA 269 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || || | ||||||||||| || ||||||||||| ||||| |||| Sbjct 270 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 324 >seq255 Length=264719 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || |||||||| | | || | | || || |||||||| || Sbjct 227523 GTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCAGCTGTTTGCCC 227582 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 | |||| |||||||| ||||||||| | | || || || || ||| || ||| Sbjct 227583 ACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGATTTTAGCTTTG 227642 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || ||||| |||| || || | || || || | ||||||||||| || Sbjct 227643 ACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTCTTGCCCGTCAGGGTC 227702 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||||||||||||||| |||| Sbjct 227703 TTCACAAAGATTTGCATCTCTGC 227725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424867877183640