Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq61 89.7 6e-13 >seq61 Length=12918418 Score = 89.7 bits (98), Expect = 6e-13 Identities = 192/285 (67%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||||| |||||| || | | || |||||||| || || || || Sbjct 2373625 GCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 2373684 Query 130076 GGCATGAGACC-CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| || || || || |||| |||||| |||| ||| |||||||| |||||||| Sbjct 2373685 GGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGAT 2373744 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||| ||||| ||| || || | || ||| || | | ||||| || ||| || || Sbjct 2373745 CCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCCTAGGGAGC--CTCTCTGTGTCCAA 2373802 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 | | || ||||| | |||||| |||| || ||| || | || | || || | || Sbjct 2373803 TCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTGAA 2373862 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 ||| | | | || || | |||||| |||| |||| |||| Sbjct 2373863 GAGGTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAG 2373907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618335902498200