Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq61 89.7 6e-13 >seq61 Length=12918418 Score = 89.7 bits (98), Expect = 6e-13 Identities = 291/441 (66%), Gaps = 31/441 (7%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| || | |||||||| |||||||| |||||||| ||||||||||| | | Sbjct 2373776 AACGTGTCCTGGCTTTTGCGGCAGTGGAAGGGATCTTCTTTTCTGGCTCGTTTGCATCGA 2373717 Query 60040 TTTTCTGGCT-CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 | |||||||| ||||| | || || ||||| ||||| | || ||||| || || ||| Sbjct 2373716 TATTCTGGCTGAAAAAAAGGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATT 2373657 Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGC---AGTGACGCTCTATTCACACCTATTG 60155 | |||| ||||| |||| || ||||| ||| | || | ||| ||| | Sbjct 2373656 AGCAGGGATGAGGGTTTCCACTGTGACTTTGCTTGCCTGATGTTCAA---ACATCTAATA 2373600 Query 60156 GAAAAATGCCCTTCCAAG--GATATTCA---CAAGATTGTTCAGTGGGCTTGTGAAGTGG 60210 | ||| ||||| || || | | | || | | ||||| ||| | || | | Sbjct 2373599 CACAAA---CCTTCGGAGCAGAGAGTGAAAGAAATAATCCTCAGT--GCTGTTAAAATAG 2373545 Query 60211 AGAGCGAGTTCATCACAGAAGCGCTTCCATG-CAAACTCATAGGTATGGAC-GCTGGAGA 60268 | |||||| | || || || ||| | || || ||||| || ||| || || | Sbjct 2373544 AACAGGAGTTCCTTACTGAGGC-CTTGCCTGTGAATCTCATTGGGATGAACTGCATG-TT 2373487 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTGGAGAA 60323 ||||| ||||| ||| | ||||| | ||| | || ||| || |||| || Sbjct 2373486 AATGAAACAGTATATTGAATTTGTGCCTGACAGACTTATGCTGGAGCTAGGTTTCAGCAA 2373427 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || ||| | | || | || || || |||| ||||||| ||||| |||||||| Sbjct 2373426 GG-----TTTTCAGAGTAGAAAATCCATTTGACTTCATGGAGAATATCTCACTGGAAGGG 2373372 Query 60384 AAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||||||||||| Sbjct 2373371 AAGACTAACTTCTTTGAGAAG 2373351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548436727486800