Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq61 178 2e-39 seq125 172 7e-38 >seq61 Length=12918418 Score = 178 bits (196), Expect = 2e-39 Identities = 605/934 (65%), Gaps = 23/934 (2%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| ||| |||||||| |||||||| ||||| || ||||| ||| |||| || || Sbjct 5049426 GCCCCTCAGCAAGGAAGAGGCTGAGTTTCCAATCGCTTATTCGATAGTGGTCCATCATAA 5049485 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||||| ||||| || | |||||| | || ||||| || ||||| | || ||| | Sbjct 5049486 AATCGAAATGTTGGACAGGCTCCTGCGCGCTATCTATATGCCCCAGAATTTTTATTGCAT 5049545 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCC--GGGGC-GTCTCGGCCATCGCCAG 13846 || |||||| || || | | |||| | | | ||||| || | | ||| || Sbjct 5049546 TCATGTGGACAAAAAATCGG---AGGAGTCCTTTCTGGGGGCAGTAACTGGCATTGCATC 5049602 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 || ||| ||| ||| | ||| ||||||| | ||||||| || | || ||||| Sbjct 5049603 CTGTTTCAATAATGTGTTTGTAGCCAGCCGGCTGGAGAACGTGGTCTATGCTTCATGGAG 5049662 Query 13907 TCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAG 13966 ||||| ||||| ||||||| ||||||| ||||||| || | | || |||| Sbjct 5049663 CCGCGTCCAGGCAGACCTCAACTGCATGCAGGACCTGTACCGCATGAGTGCCACATGGAA 5049722 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 ||||||| | || || ||||| ||||| |||||| |||| ||||||||||| || || | Sbjct 5049723 GTACCTGATAAATCTCTGCGGCATGGATTTCCCGATCAAAACCAACCTGGAAATTGTCAG 5049782 Query 14027 GGCGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCA 14083 | ||| ||| | |||| || || || |||||||| ||| ||||| | | Sbjct 5049783 GAAGCTCAAGTCATTGATGGGTGGAAACAA---CCTGGAGACAGAGAAAATGCCGCCCAA 5049839 Query 14084 CAAGCTGCACCGCATCAGGAAGAGGC---ACGTGGTGGCCAGCGGCGGCGTGGTGGTCAA 14140 ||| | | | |||||| | ||| |||| || |||| | || ||| Sbjct 5049840 TAAGAAGGA---AAGGTGGAAGAAACACTACGAAGTGGTCA---GCGGGAAGCTGACCAA 5049893 Query 14141 CACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTA 14200 || || |||| || || || || ||| || || ||||| | || | || || Sbjct 5049894 AACTGGTGCCGACAAAGCGCCCCCTCCTCTCCAGACACCTCTCTTTTCTGGCAGTGCCTA 5049953 Query 14201 CTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCT 14260 ||||| ||| | || |||| |||| | ||| | || | || | | | Sbjct 5049954 CTTTGTGGTTAGTAGGCAGTTTGTGGGGTACGTGTTAGAGAATGAAAGAATCCAGAGGTT 5050013 Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 ||| | ||| ||||||| |||||||| || ||| | || |||||||| | ||| | Sbjct 5050014 TATGGAGTGGGCGAAGGACACCTACAGCCCTGATGAGTATCTCTGGGCCACGATTCAGCG 5050073 Query 14321 AATGTACGGGACGCCC-GGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGT 14379 || | | | ||| || || || | | ||||||||||| || |||||| Sbjct 5050074 GAT-CCCTGAAGTCCCAGGCTCCATGTCCTTAAGCCACAAGTACGACATGTCTGACATGC 5050132 Query 14380 GGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCC 14439 |||| || ||||| ||||||||||| |||| || || || | || || || | Sbjct 5050133 TTGCCAGTGTGAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACACTGCCAAGGGCGCGC 5050192 Query 14440 TGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACG 14499 ||||| || ||| ||| |||| | | | || | ||| | || || |||| || Sbjct 5050193 CCTACCCCCCCTGCAGCGGGGTCCATCTGCGCTCCGTGTGCGTGTTTGGAGCCGGTGATT 5050252 Query 14500 TGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACG 14559 |||||||| || | || | ||| | || ||||| || || ||| || |||| Sbjct 5050253 TGAAGTGGATGCTGGGCACGCACCACTTATTTGCCAATAAATTTGACACTGATGTGGACC 5050312 Query 14560 AGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 || ||| | | || ||||| ||| || |||| Sbjct 5050313 TTTTTGCCATCCAGTGCCTGGATGAGCACCTGCG 5050346 >seq125 Length=4531708 Score = 172 bits (190), Expect = 7e-38 Identities = 443/662 (67%), Gaps = 41/662 (6%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||| || ||| |||| || || || | |||||| || || |||||| | | Sbjct 2738857 CCGCTGTCCCCGGAGGAGGCCGCCTTCCCGCTGGCCTACGTCATGGTCATCCACAAGGAC 2738798 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||| | |||||||| ||| | | ||| | ||| ||||||||| |||||||||| Sbjct 2738797 TTCGGCACCTTCGAGCGGCTCTTCCGCGCCGTGTACATGCCGCAGAACGTCTACTGCGTG 2738738 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||||||||| ||| | | | || || || || ||| |||| |||| | ||| Sbjct 2738737 CACGTGGACGAGAAGGCGGCCCCCGCGTACAAGGCGGCCGT---GGCC--CGCCTGCTGC 2738683 Query 13851 -----TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACG-TGGTGTACGGCTCCTGG 13904 ||||| |||| ||||||| || | | | || | ||||||||| || Sbjct 2738682 GCTGCTTCCCCAACGCCTTCCTGGCCTCGCG-CGCCGAGTCGGTCGTGTACGGCGGCT-- 2738626 Query 13905 AGTCGCG--TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGT 13962 | ||||| ||||||||||| ||| |||| || |||||||| | ||| |||| | Sbjct 2738625 ACTCGCGGCTGCAGGCCGACGTCAACTGCCTGCGGGACCTGGCGGGCTCGGCCGTGCGCT 2738566 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || ||||| |||||||| ||||| |||||||||||| ||||||||||||||||||| Sbjct 2738565 GGCGGTACGTGCTCAACACCTGCGGCCAGGACTTCCCGCTGAAGACCAACCTGGAGATCG 2738506 Query 14023 TGCGGGCGCTGAAGGCCCTGGGCG---GCAAGAAC-GCCCTGGAGAGCGAGGGCATGCCC 14078 ||||| ||||||||| | ||| |||| | | ||| || | || || |||| Sbjct 2738505 TGCGGCACCTGAAGGCCTTTCGCGGTCGCAACATCACCCCCGGGGTGCTGCCGCCCGCCC 2738446 Query 14079 A-ACCACAAGCTGCACC--------GCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGC 14129 | || || | ||| ||| ||||| || | || | | ||||| | | Sbjct 2738445 ACGCCGTGGGCAGGACCAAGTTCGTGCACCAGGA----GCTC-CGGGGCCGAGCGGGGTC 2738391 Query 14130 GT-GGTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGC 14188 | ||| | || | || | |||||||||||| || | | | || |||||| Sbjct 2738390 CTCCGTGAGAAGGACGGACACGCTCAAGGCCCCGCCCCCCCACGGCATGACCATCTACTT 2738331 Query 14189 GGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGC- 14247 || | || ||| | || | || || | |||||||||||||| ||| | ||| || Sbjct 2738330 CGGCACGGCCTACGTGGCCCTGACTCGCGGCTTCGTGGACTTCGTGCTCCACGACCCGCG 2738271 Query 14248 --CGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTG 14305 | |||| ||||| |||| |||| | ||||||||||||||||||||||||| | || Sbjct 2738270 GGCTGTGGACCTGC---TGCAGTGGTCCCGGGACACGTACAGCCCCGACGAGCACTTCTG 2738214 Query 14306 GG 14307 || Sbjct 2738213 GG 2738212 Score = 152 bits (168), Expect = 7e-32 Identities = 400/596 (67%), Gaps = 47/596 (8%) Strand=Plus/Minus Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 |||||||| ||| | | ||| | ||| ||||||||| |||||||||| ||||||||| Sbjct 2759425 TTCGAGCGGCTCTTCCGCGCCGTGTACATGCCGCAGAACGTCTACTGCGTGCACGTGGAC 2759366 Query 13800 TCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC-----TTCC 13854 ||| | | | || || || || ||| |||| |||| | ||| |||| Sbjct 2759365 GAGAAGGCGGCCCCCGCGTACAAGGCGGCCGT---GGCC--CGCCTGCTGCGCTGCTTCC 2759311 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACG-TGGTGTACGGCTCCTGGAGTCGCG-- 13911 | |||| ||||||| || | | | || | ||||||||| || | ||||| Sbjct 2759310 CCAACGCCTTCCTGGCCTCGCG-CGCCGAGTCGGTCGTGTACGGCGGCT--ACTCGCGGC 2759254 Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971 ||||||||||| ||| |||| || |||||||| | ||| |||| ||| ||||| Sbjct 2759253 TGCAGGCCGACGTCAACTGCCTGCGGGACCTGGCGGGCTCGGCCGTGCGCTGGCGGTACG 2759194 Query 13972 TGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGC 14031 |||||||| ||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 2759193 TGCTCAACACCTGCGGCCAGGACTTCCCGCTGAAGACCAACCTGGAGATCGTGCGGCACC 2759134 Query 14032 TGAAGGCCCTGGGCGGCAAGAAC----GCCCTGGAGAGCGAGGGCATGCCCA-ACCACAA 14086 |||||||| | ||||| ||| ||| || | || || ||||| || Sbjct 2759133 TGAAGGCCTTTCGCGGCCGCAACATCACCCCCGGGGTGCTGCCGCCCGCCCACGCCGTGG 2759074 Query 14087 GCTGCACC--------GCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGT-GGTGGT 14137 || | ||| ||| | ||| ||| ||| | || | |||| | |||| | Sbjct 2759073 GCAGGACCAAGTTCGTGCACCGGGA----GCAGCTGG-GCCCGGGCTCGGCCTCGGTGAT 2759019 Query 14138 CAACACCGGCAGGAAC--AAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAAC 14195 || || | ||| | ||| | || ||||| | || || |||||| || | Sbjct 2759018 CAGGAC--GGAGGCCCGGAAGACGCCCCCGCCCCACAACCTCACCATCTACTTCGGCTCC 2758961 Query 14196 GCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGA----CGAGCCGGT 14251 || ||| | || | || ||||||||||| |||||||||| ||| || ||| | Sbjct 2758960 GCCTACGTGGCCCTGACGCGGGAGTTCGTCAGCTTCGTCCTCGGGGACCCGCGCGCCCG- 2758902 Query 14252 GGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307 || ||||| ||| ||||| | ||||||||||||||||||||||||| | |||| Sbjct 2758901 GGACCTGC---TGCTCTGGTCCCGGGACACGTACAGCCCCGACGAGCACTTCTGGG 2758849 Score = 122 bits (134), Expect = 1e-22 Identities = 212/305 (70%), Gaps = 14/305 (5%) Strand=Plus/Minus Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 |||||||| ||| | | ||| | ||| ||||||||| |||||||||| ||||||||| Sbjct 2748235 TTCGAGCGGCTCTTCCGCGCCGTGTACATGCCGCAGAACGTCTACTGCGTGCACGTGGAC 2748176 Query 13800 TCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC-----TTCC 13854 ||| | | | || || || || ||| |||| |||| | ||| |||| Sbjct 2748175 GAGAAGGCGGCCCCCGCGTACAAGGCGGCCGT---GGCC--CGCCTGCTGCGCTGCTTCC 2748121 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCG--T 13912 | |||| ||||||| || | | || ||||||||| || ||||| | Sbjct 2748120 CCAACGCCTTCCTGGCCTCGCGCGCGGAGTCGGTCGTGTACGGCGGCTTC--TCGCGGCT 2748063 Query 13913 GCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCT 13972 || ||||||| | |||| || |||||||| | ||| |||| ||| ||||| | Sbjct 2748062 GCTGGCCGACGTGCACTGCCTGCGGGACCTGGCGGGCTCGGCCGTGCGCTGGCGGTACGT 2748003 Query 13973 GCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCT 14032 ||||||| ||||| |||||||||||| |||||||||||||||||||||||| || Sbjct 2748002 GCTCAACACCTGCGGCCAGGACTTCCCGCTGAAGACCAACCTGGAGATCGTGCGGTACCT 2747943 Query 14033 GAAGG 14037 ||||| Sbjct 2747942 GAAGG 2747938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658633431187200