Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 2e-15 seq21 93.3 3e-14 seq13 93.3 3e-14 seq134 91.5 9e-14 seq1111 87.8 1e-12 seq57 82.4 5e-11 seq39 82.4 5e-11 >seq16 Length=30823778 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| || | ||| |||||| ||||||||| |||||||| || || Sbjct 1301354 CCACCCCGAAGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGAC 1301413 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||||||||| ||||| || || | |||||| || || || Sbjct 1301414 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 1301473 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||| || |||||| Sbjct 1301474 ATTCCTTCCTTATCCTGGATCTT 1301496 >seq21 Length=29177037 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| || | ||| |||||| ||||||||| ||||| || || || Sbjct 16234638 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 16234697 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||||||||| ||||| || || | |||||| || || || Sbjct 16234698 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 16234757 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||| || |||||| || | | || || || | || || Sbjct 16234758 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 16234817 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || || | |||||||| ||||||||||| ||| Sbjct 16234818 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 16234868 >seq13 Length=31987310 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| || | ||| |||||| ||||||||| ||||| || || || Sbjct 25852491 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 25852550 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||||||||| ||||| || || | |||||| || || || Sbjct 25852551 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 25852610 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||| || |||||| || | | || || || | || || Sbjct 25852611 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 25852670 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || || | |||||||| ||||||||||| ||| Sbjct 25852671 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 25852721 >seq134 Length=4000202 Score = 91.5 bits (100), Expect = 9e-14 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 34484 CTCT-AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| ||| | ||| || | ||| |||||| ||||||||| |||| || ||||| | Sbjct 2759337 CTCTGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAA 2759396 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || | | | ||||||||||||||||| ||||| || || | |||||| || || || | | Sbjct 2759397 GTACACCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATT 2759456 Query 34603 CCCTCCTTGTCTGTGATCTT 34622 || ||||| || |||||| Sbjct 2759457 CCTTCCTTATCCTGGATCTT 2759476 >seq1111 Length=9394 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| | ||| ||| || ||| ||| || || ||||| || || || || || || Sbjct 101 AGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 160 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || ||||| || | | |||| ||||||||||| | || ||| Sbjct 161 CCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCC 220 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA----AAATTGTGTCTTCGCTCTCCACTTCCAC 34664 ||||| ||| ||| | ||| |||| ||| ||||| | ||| || || | Sbjct 221 TTGTCCTGGAT-TTTGGCTTT---GATATTCTCAATGGTGTCACTGGGCTCTACCTCGAG 276 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || || | || |||||||| |||||||| Sbjct 277 GGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq57 Length=13814656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| || | ||| |||||| ||||||||| ||| | || || || Sbjct 7965739 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGAC 7965680 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||||||||| ||||| || | | |||||| || || || Sbjct 7965679 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGA 7965620 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||| || |||||| Sbjct 7965619 ATTCCTTCCTTATCCTGGATCTT 7965597 >seq39 Length=20300788 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| || | ||| |||||| ||||||||| ||||| || || || Sbjct 4804632 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 4804573 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||||||||| ||||| || || | |||||| || || || Sbjct 4804572 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 4804513 Query 34600 ACTCC 34604 | ||| Sbjct 4804512 ATTCC 4804508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314680329572885