Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq21 122 8e-23 seq13 122 8e-23 seq134 109 5e-19 seq69 104 2e-17 seq57 86.0 5e-12 >seq21 Length=29177037 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| |||| ||||| || || ||||| || Sbjct 16234864 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTCG 16234805 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | ||||| || || || || || ||||| || ||||| |||||| Sbjct 16234804 GATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAA 16234745 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | ||||| | || | || || |||||| Sbjct 16234744 CAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAAC 16234685 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | ||| | |||||| | | |||||||| Sbjct 16234684 ATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGG 16234638 >seq13 Length=31987310 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| |||| ||||| || || ||||| || Sbjct 25852717 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTCG 25852658 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | ||||| || || || || || ||||| || ||||| |||||| Sbjct 25852657 GATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAA 25852598 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | ||||| | || | || || |||||| Sbjct 25852597 CAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAAC 25852538 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | ||| | |||||| | | |||||||| Sbjct 25852537 ATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGG 25852491 >seq134 Length=4000202 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || | || ||| |||| ||||| | || ||||| || Sbjct 2759560 ATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACTATCACTCTCAAGGTCGAACCCTCG 2759501 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | ||||| || || || || || ||||| || |||||||||||| Sbjct 2759500 GATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCAA 2759441 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | ||||| | | || | || || ||| || Sbjct 2759440 CAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGGTGTACTTTGTCAGACTACCAC 2759381 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||||||||| || | ||| | |||||| Sbjct 2759380 ATCCAAAAGGAGTCCACTCTTCATCTCGTTTTG 2759348 >seq69 Length=11345371 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| ||||| ||||| || | || ||| |||| ||||| || || ||||| || Sbjct 5551960 ATGTAGATGTTTGTGAAAACCCTTTCGGGGAAGACTATCACTCTGGAGGTCGAACCCTCG 5552019 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || | || || |||||||| || | |||||||||| Sbjct 5552020 GATACAATAGAAAATGTCAAGGCCAAGTTCCAGGATAAAGAAGGAATTCAACCCGATCAA 5552079 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | ||||| | | | | || || |||||| Sbjct 5552080 CAGAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGATGTGCTTTGTCTGACTACAAC 5552139 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||| |||||| || | ||| | |||||| | | || ||||| Sbjct 5552140 ATCCAAAGGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGAGGTGG 5552186 >seq57 Length=13814656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 ||||| || | || ||| |||| ||||| || || ||||| | || || | || | Sbjct 7965529 AAAACCCTCATGGGGAAGACTATCACTCTCGAGGTCGAACCCTTGGATACG-TAGAAAAT 7965587 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 ||||| || || || || || ||||| || ||||||||||||||| | | || | Sbjct 7965588 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCAACAGAGATGGATCTTT 7965647 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 || || |||||| | ||||| | || | || || |||| ||| ||||||||||| Sbjct 7965648 GCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAGCATCCAAAAGGAGTCC 7965707 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || | ||| | |||||| | | |||||||| Sbjct 7965708 ACTCTTCATCTCGTTTTGAGACTTCGGGGTGG 7965739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434848568414400