Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19 154 1e-32 >seq19 Length=29725166 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||| ||||| |||| ||| || ||||||||||| ||||| || | Sbjct 5421006 GACGTGTGCGATCATGTAGGTGAGTAGAGAGTAGCTGGCAATGTTGAAGGGCACGCCCAG 5421065 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | || || ||||||||||| ||||| || ||| | || ||||| Sbjct 5421066 GCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGAGAGCTCACCGTTCACCACATAGAA 5421125 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| |||| |||||| || || || ||||| ||||||||||| Sbjct 5421126 CTGGCAAAGGGCGTGGCATGGAGGTAGGGCCATGAGAGGGAGATC 5421170 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| || || || |||||| |||| ||||| ||||| || | ||| Sbjct 5421170 GATCTCCCTCTCATGGCCCTACCTCCATGCCACGCCCTTTGCCAGTTCTATGTGGTGAAC 5421111 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| ||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 5421110 GGTGAGCTCTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTC 5421051 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || ||| |||| ||||| ||||||||||| || ||| Sbjct 5421050 AACATTGCCAGCTACTCTCTACTCACCTACATGATCGCACACGTC 5421006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448190425868400