Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq40 242 3e-59 seq23 127 2e-24 >seq40 Length=19741185 Score = 242 bits (268), Expect = 3e-59 Identities = 394/553 (71%), Gaps = 17/553 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 || |||||||||| || || || | || |||||||| || || || || | ||||| Sbjct 3617585 CTGAACTGTATTGTCGCCGTGTCACAGAACATGGGCATCGGCAAGAACGGGGAGCTGCCC 3617644 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | ||||||||| | | ||||| |||||||| | | || || | Sbjct 3617645 TGGCCCCCACTCAGAAATGAATTCACATGTTTTCGGAAAATGACCACCACCTCTTCAGTA 3617704 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || || ||||| || ||||||||||| || |||| | | | Sbjct 3617705 GAAGGTAAACAGAATCTGGTGATAATGGGTAGGAAGACATGGTTCTCCATTCC--TGAGA 3617762 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || |||||| ||| | |||||||||||| | || |||||||| | Sbjct 3617763 AGAATCGACCTTTAAAAGGCAGAATCAATTTAGTTCTCAGTAGAGAGCTCAAAGAGCCTC 3617822 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT-AGGA 2433 || || |||| ||| |||| |||||| | ||| | || || ||| | || | || | Sbjct 3617823 CAACAGGAACTCATTTTCTTGCCAAAAGTCTTGATGATGC-CTTAAAACT-TACTGAGCA 3617880 Query 2434 -CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 |||||||||| | | | ||||| | | |||||||| | || || || ||||| ||| | Sbjct 3617881 GCCAGAATTAACAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGCTCTGTGTATCA 3617940 Query 2493 GGAGAGCATTAC-AAGAT--CTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAA 2549 ||| || |||| || | | || | || |||||| | ||||| || |||| | Sbjct 3617941 GGA-AG--TTACGAACAAGCCGGGCCATTTGAGACTGTTTGTGACAAGAATCATGCAGGA 3617997 Query 2550 ATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGA 2609 |||||||||||| |||| || ||||||||| || | |||||||||| |||||||| Sbjct 3617998 ATTTGAATGTGACACATTTTTTCCAGAAATTGATTTGGAGAAATACAAACTTCTTACTGA 3618057 Query 2610 ATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGAT 2669 | ||||| ||| |||| || || ||||| || || |||| |||| |||||| | Sbjct 3618058 CTACCCAGGGGTTGTTTCTGATGTCCAGGAAGAGAAAGGCATTAAGTACACATTTGAAGT 3618117 Query 2670 ATATGaaaaaaaa 2682 ||||||||| ||| Sbjct 3618118 ATATGAAAAGAAA 3618130 >seq23 Length=28655905 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 |||||||| ||||| |||||||| ||| | | | ||| |||||||| |||||||| Sbjct 14175715 GAAGTTGTGATTGTGACATGGCAGAAAATCAGGCGTTTAAGTCCAGAAAATATGGCCACA 14175656 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || | || ||||| |||||||| | || || ||||| || ||||| || Sbjct 14175655 TTCAGCAAGAAGTTTGGAGTTGTGGTTCAGCCTGACTATAAGGATAAGATAAACATCACC 14175596 Query 1401 GAGCTTGGACTACAAA-ACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGG 1459 | || |||| |||| | |||| | ||||||||||| || || |||||||||| | Sbjct 14175595 CAACT-GGACCTCAAAGAGTCAACCCTTACCTTCTGGAATACTACCCTGGATGATGAGGA 14175537 Query 1460 GTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508 ||| |||||||| | || || || || || |||||| |||| || ||| Sbjct 14175536 GTGTTACAAGTGCCTCTTCAATACCTTCGGGTCTGGGCAGATCTCTGGA 14175488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414411914304580