Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq21 86.0 4e-12 seq13 86.0 4e-12 >seq21 Length=29177037 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| ||||| ||||| ||| || | || |||||| | Sbjct 16234867 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 16234808 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || |||| | ||| ||||| || || || || ||||| |||| | Sbjct 16234807 TCGGATACGATAGAAAAT--GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTG 16234750 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || | || || ||||| || |||||| | || || | ||| | ||||| || | Sbjct 16234749 ATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACT 16234690 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||||||||||| ||| |||| | ||| | |||||| Sbjct 16234689 ACAACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTG 16234652 >seq13 Length=31987310 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| ||||| ||||| ||| || | || |||||| | Sbjct 25852720 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 25852661 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || |||| | ||| ||||| || || || || ||||| |||| | Sbjct 25852660 TCGGATACGATAGAAAAT--GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTG 25852603 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || | || || ||||| || |||||| | || || | ||| | ||||| || | Sbjct 25852602 ATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACT 25852543 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||||||||||| ||| |||| | ||| | |||||| Sbjct 25852542 ACAACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTG 25852505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355806690297315