Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1111 109 5e-19 seq255 87.8 2e-12 seq49 84.2 2e-11 >seq1111 Length=9394 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | | ||| ||| || ||| |||||| || || || || || | || || || | Sbjct 103 GCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCC 162 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||||||||||||||| || ||| |||||||||| | || | || || || Sbjct 163 ATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTT 222 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| |||||| ||||| || | | || || || | ||| || || | ||||| Sbjct 223 GTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGAT 282 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||||||| || || |||||||| ||||||| Sbjct 283 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 320 >seq255 Length=264719 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | | ||| || || ||| |||||| || || || || || | || || | | Sbjct 227504 GCGCAGCCCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCC 227563 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || |||||||||||| |||| || ||||||||||| || | | | || || || Sbjct 227564 ATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTT 227623 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| |||||| ||||| || | || || || | ||| || | | ||||| Sbjct 227624 GTCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGAT 227683 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||||||| || || |||||||||||||||| Sbjct 227684 GGTCTTGCCCGTCAGGGTCTTCACAAAGATTTGCATCT 227721 >seq49 Length=15761451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| |||||| || || || || | | || || || | || || Sbjct 14388152 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGGGTGCGGCCATCTTC 14388211 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || ||| ||| |||||||| || | || ||| |||||| Sbjct 14388212 CAGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATGCACTCCTTGTCCTG 14388271 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| ||| | || || || | |||| | | | ||||| | | Sbjct 14388272 GATTTTGGCTTTGACAGTCTCAGTGGTGTCACTGGTCTCCCCCTGGAGGGTGATGGTCTC 14388331 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||| ||| || || |||||||| |||||| Sbjct 14388332 GCCCATCAAGGTCTTCACAAAGATCTGCATC 14388362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429478355307485