Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21 132 3e-26 seq13 132 3e-26 seq16 122 6e-23 seq1111 116 3e-21 seq134 109 4e-19 seq57 105 5e-18 seq255 93.3 3e-14 >seq21 Length=29177037 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| || || || Sbjct 16234867 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 16234808 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | || || || || || ||||| | || || ||| Sbjct 16234807 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 16234748 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | || || ||||| || |||||||| ||||| | ||| ||||| || ||| Sbjct 16234747 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTAC 16234688 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | ||||| || Sbjct 16234687 AACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAG 16234650 >seq13 Length=31987310 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| || || || Sbjct 25852720 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 25852661 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | || || || || || ||||| | || || ||| Sbjct 25852660 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 25852601 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | || || ||||| || |||||||| ||||| | ||| ||||| || ||| Sbjct 25852600 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTAC 25852541 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | ||||| || Sbjct 25852540 AACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAG 25852503 >seq16 Length=30823778 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| || | || Sbjct 1301583 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCAAACCC 1301524 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | || || || || || ||||| | || || ||| Sbjct 1301523 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 1301464 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | || || ||||| || |||||||| ||||| | ||| ||||| || || Sbjct 1301463 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTAT 1301404 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| |||| ||| | ||| | ||||| ||| | || || || Sbjct 1301403 AACATCCAAAAGGAGTTCACTCTTCATCTCGTTTTGAGGCTTCGGGGTGG 1301354 >seq1111 Length=9394 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| ||||| || || ||| Sbjct 318 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 259 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||||| ||| | |||| | ||||| ||||| | ||||| || || Sbjct 258 GACACCATTGAGAATATCAAAGCCAAAA-TCCAGGACAAGGAAGGCATCCCGCCGGACCA 200 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| |||||||| ||||| || | ||||| | || ||||| Sbjct 199 GCAGCCTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAA 140 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 139 CATCCAGAAAGAGTCCAC 122 >seq134 Length=4000202 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| | ||| || || ||||||||| | || || || Sbjct 2759563 AAGATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACTATCACTCTCAAGGTCGAACCC 2759504 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | || || || || || ||||| | || || ||| Sbjct 2759503 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGAT 2759444 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | || || ||||| || |||||||| ||||| | | ||||| || ||| Sbjct 2759443 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGGTGTACTTTGTCAGACTAC 2759384 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| |||||||| | ||| | ||||| || Sbjct 2759383 CACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAG 2759346 >seq57 Length=13814656 Score = 105 bits (116), Expect = 5e-18 Identities = 155/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||| |||| | |||||||||| ||| || || ||||||||||| || || || Sbjct 7965511 AAGATGCAGGATTTCATGAAAACCCTCATGGGGAAGACTATCACTCTCGAGGTCGAACCC 7965570 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || || |||| | || || || || || ||||| | || || ||| Sbjct 7965571 TTGGATAC-GTAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGAT 7965629 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || ||||| || |||||||| ||||| | ||| ||||| || ||| Sbjct 7965630 CAACAGAGATGGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTAC 7965689 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||| ||||| |||||||| | ||| | ||||| || Sbjct 7965690 AGCATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAG 7965727 >seq255 Length=264719 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| ||||| || || ||||| ||| | || || ||| Sbjct 227719 ATGCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCAAGGTAGAGGCCAGT 227660 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| ||| | ||| | |||| | ||||| ||||| | | ||| ||||| Sbjct 227659 GACACCACTGAGAATGTCAAAGCTAAAA-TCCAGGACAAGGAAGGCATCCTGCCGGATCA 227601 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||| |||||||| ||||| || | | ||| | || ||||| Sbjct 227600 GCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCACACCCTCTCAGACTACAA 227541 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 227540 CATCCAGAAAGAGTCCAC 227523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337956685125260