Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq107 140 8e-28 seq121 102 2e-16 seq49 98.7 2e-15 seq1111 93.3 1e-13 seq46 91.5 4e-13 >seq107 Length=6112886 Score = 140 bits (154), Expect = 8e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACA-AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||| | || || ||| |||| || ||||||| ||||| || | |||||| Sbjct 2237202 CGAAGTCTCAAAAATGAGATGAAGAATGGACTCATTTTGGATGTTGTAGTCAGACAAAGT 2237143 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| || || || ||||||||||| | || |||||| || || ||||| || Sbjct 2237142 ATGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGTTGATCAGGAGGAATTCC 2237083 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || | ||||||| ||| || || | Sbjct 2237082 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCATATCTGAGGGTTCGACCTCCAG 2237023 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA-TGGT 225721 ||||| ||||| ||| | | |||||||||| | ||||| ||| |||| Sbjct 2237022 AGTGATAGTCTTTCCCATAAGGGTTTTTATGAGAATCTGCATCTTAGTGGT 2236972 >seq121 Length=4665274 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| |||||||||||||| |||| ||||| || | || || | ||||| Sbjct 2221397 CAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 2221456 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || | ||||| || Sbjct 2221457 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCTCTCCTTATC 2221516 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 |||||||| ||| ||| ||||||||| Sbjct 2221517 CTGGATCTTGGCCTTGACATTCTCGATGGTG 2221547 >seq49 Length=15761451 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || ||||| ||||| |||| ||||| | | | || Sbjct 14388140 ACGTAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGGGT 14388199 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || ||||| || || || | | ||||||||||| || | Sbjct 14388200 GCGGCCATCTTCCAGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATGCA 14388259 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||| ||||| ||| || || |||| || ||||||| ||| ||| | | | Sbjct 14388260 CTCCTTGTCCTGGAT-TTTGGCTTTGACAGTCTCAGTGGTGTCACTGGTCTCCCCCTGGA 14388318 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||| |||| |||| || || Sbjct 14388319 GGGTGATGGTCTCGCCCATCAAGGTCTT 14388346 >seq1111 Length=9394 Score = 93.3 bits (102), Expect = 1e-13 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || || || ||||| ||||| |||| ||||| || | | || | ||||| || ||| Sbjct 113 AGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGC 172 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 || || || || || || || | || ||||| ||||| || ||||||||||| ||||| Sbjct 173 TGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGAT- 231 Query 225628 TTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| || || | | || |||||||| || || || || | ||||| |||||||| Sbjct 232 TTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 291 Query 225687 CGTCA 225691 ||||| Sbjct 292 CGTCA 296 >seq46 Length=16750451 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| ||||||||||| || |||| ||||| |||| || || | ||||| Sbjct 1815905 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 1815846 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || |||||||| || || || ||||| || Sbjct 1815845 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 1815786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192334937314430