Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq19 181 9e-41 seq40 140 3e-28 seq64 96.9 3e-15 >seq19 Length=29725166 Score = 181 bits (200), Expect = 9e-41 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct 5420998 AGACCGGTGACGTGTGCGATCATGTAGGTGAGTAGAGAGTAGCTGGCAATGTTGAAGGGC 5421057 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| |||||||| |||| | Sbjct 5421058 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGAGAGCTCACCGTTCACC 5421117 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||| ||||| ||||| |||||||||||| Sbjct 5421118 ACATAGAACTGGCAAAGGGCGTGGCATGGAGGTAGGGCCATGAGA 5421162 >seq40 Length=19741185 Score = 140 bits (154), Expect = 3e-28 Identities = 189/260 (73%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||| ||| | || || ||||| ||||| || ||||| |||| || | ||| || | Sbjct 3617836 ATGAGTTCCTGTTGGAGGCTCTTTGAGCTCTCTACTGAGAACTAAATTGATTCTGCCTTT 3617777 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||||||||||| || Sbjct 3617776 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCATGTCTTCCTACCCATTATCACCAGATT 3617717 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| | ||||| || | ||||| ||||| | | || || || Sbjct 3617716 CTGTTTACCTTCTACTGAAGAGGTGGTGGTCATTTTCCGAAAACATGTGAATTCATT--- 3617660 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTG-GACAC 114499 ||| | || |||| ||||| || ||||| || |||||||||||| |||| ||||| Sbjct 3617659 ---TCTGAGTGGGGGCCAGGGCAGCTCCCCGTTCTTGCCGATGCCCATGTTCTGTGACAC 3617603 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || || |||| |||||| Sbjct 3617602 G--GCGACAATACAGTTCAG 3617585 >seq64 Length=12214461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 7697427 TTGAGCTCTCTACTGAGAACTAAATTGATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 7697486 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7697487 ATGGAGAACCACGTCTTCCTACCCATTATCACCAGATTCTGTTTACCT 7697534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406099615785670