Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq61 230 2e-55 seq37 89.7 4e-13 >seq61 Length=12918418 Score = 230 bits (254), Expect = 2e-55 Identities = 570/851 (67%), Gaps = 17/851 (2%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||||| || ||||| | || ||||| ||||| || ||||| Sbjct 2373345 TACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCCATGAAGTCAAA 2373404 Query 4331 CGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACA--AGCAATCGGTCAGC 4387 ||||| | | || || || | | || | |||| || | | || ||||| Sbjct 2373405 TGGATTTTCTACTCTGAAAACCTTGCTGAAACCT---AGCTCCAGCATAAGTCTGTCAGG 2373461 Query 4388 TACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAG 4447 |||||||| |||||||| |||| | |||||| || ||||| | ||||||| | Sbjct 2373462 CACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCCCAATGAGATTCACAGGCAA 2373521 Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG-ATTATATCTTTTATTT 4506 || | || | ||||| |||||||| | || || ||| | ||||| ||||| | | Sbjct 2373522 GGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTGAGGATTATTTCTTTCACTC 2373580 Query 4507 TATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCA 4566 | | | || ||||| | || || | | |||| | || ||||| ||||| || | Sbjct 2373581 TCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGGCAAGCAAAGTCACAGTGGA 2373640 Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTC-TC 4625 |||| || || |||||||| ||||| || ||||| || | || ||||| | |||| | Sbjct 2373641 AACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCCTT 2373700 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 ||||| ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||| Sbjct 2373701 TTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCA 2373760 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 || || | | || || | |||| || ||| | ||||| || |||||| Sbjct 2373761 AAAGCCAGGACACGTTCTCCTAGGGAGC-CTCTCTGTGTCCAATCC-CCACAAGGCCCAG 2373818 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805 | || || ||||| || || || ||||| | ||||| || || | || | ||| Sbjct 2373819 TCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTGAAGAGGTT-TTCCCTTCC 2373877 Query 4806 AATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTC 4864 ||| |||| | | ||||| || | || || || ||||||||||| ||| | ||||| Sbjct 2373878 TTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGTACATTTCAGAGTGTCTGTTTTC 2373937 Query 4865 TATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 | ||| | ||||| || || || || | |||||||| | |||||||| | | ||| Sbjct 2373938 CGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAA 2373997 Query 4925 TCTT---TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 ||| || || | ||| || | || || ||||| ||| || || || |||| | Sbjct 2373998 CCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-GGGGCGGCGAAGAAAGCCAGGAT 2374056 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGT 5041 || ||| | |||||| ||||| ||||| || | || ||| | | || || | Sbjct 2374057 GTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGTCCCGGTGCTGGATGTCCTTGGA 2374116 Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 | | ||||| || | ||||| || ||||| || || || ||||||| ||| || Sbjct 2374117 AAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGGCCTTCCTGTACATCTGCCAGAT 2374176 Query 5102 ATCAGGATACT 5112 ||| | |||| Sbjct 2374177 ATCGTGGTACT 2374187 >seq37 Length=21270769 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || |||||||| ||||| || ||||| || | || ||||| | ||||| ||||| Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || || || || Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGCC 14837934 Query 4692 AC 4693 || Sbjct 14837935 AC 14837936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct 14839885 TCTTTAATGTAAGTATCAATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCA 14839944 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| || |||||||| Sbjct 14839945 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTCACCTGAACTTC 14839988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426982746052385