Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq19 156 3e-33 >seq19 Length=29725166 Score = 156 bits (172), Expect = 3e-33 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || ||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||| Sbjct 5420998 AGACCGGTGACGTGTGCGATCATGTAGGTGAGTAGAGAGTAGCTGGCAATGTTGAAGGGC 5421057 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||| ||||| || |||||||| || | Sbjct 5421058 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGAGAGCTCACCGTTCACC 5421117 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||||||||| ||||| || |||||||| Sbjct 5421118 ACATAGAACTGGCAAAGGGCGTGGCATGGAGGTAGGGCCATGAG 5421161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||||||||| || || || || || || || | || || |||| Sbjct 5425050 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 5425109 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | ||| ||| ||| ||||||| || |||| ||| |||||||| |||||||| | Sbjct 5425110 CTCTGGCGGAGAATCCCAGGCTGTCCAAGAAATCTCGGGACCCGTTGGCATCCCAGATTT 5425169 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| || || || || | |||||||| || Sbjct 5425170 TCACTCCCTTAGACGACAGTTCATTAGCATTTGTGGATCC 5425209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369449354225195