Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq61 318 8e-82 seq119 131 2e-25 seq37 111 2e-19 >seq61 Length=12918418 Score = 318 bits (352), Expect = 8e-82 Identities = 512/729 (70%), Gaps = 19/729 (3%) Strand=Plus/Plus Query 47791 TTCTTTAAAAGTCAACATCTAAAG----AAAAATGATTATCTTCTTGA---GACATAACT 47843 ||||||| ||||| |||| || | ||||| ||||||| | || ||||| ||| Sbjct 2373265 TTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCACT 2373324 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 ||||| | ||||| || | || | ||||| || || ||||| || ||||||| ||| Sbjct 2373325 CCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAG 2373384 Query 47904 ATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCT 47963 ||||| ||||| || ||||||||||| || | | ||| || | || |||| || Sbjct 2373385 ATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCTCC 2373444 Query 47964 GAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCT 48023 || ||||| || | || ||||| ||||| |||||| | || ||||| || Sbjct 2373445 AGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCCCA 2373504 Query 48024 ATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACT 48083 || || || || || | ||||| ||||| ||||| ||||| || | |||||| | Sbjct 2373505 ATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCACTGAGG 2373564 Query 48084 ATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143 ||||| | | || | | ||| ||| | | | |||||| ||||| | || Sbjct 2373565 ATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGGCAA 2373624 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||| ||||| || | ||| ||||| || ||||| | ||| || ||||||||||| || Sbjct 2373625 GCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 2373684 Query 48204 GGCATTAGTCCACGTTTTTTG-AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATAT 48262 ||||| ||||| | |||||| ||||| ||||| | || || || ||||||||||| || Sbjct 2373685 GGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGAT 2373744 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---AT 48319 ||||| || |||||||| || | | ||||| || || || ||||| || Sbjct 2373745 CCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCTCTCTGTGTCCAAT 2373803 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 || | | ||||| || ||||||||||| ||||||||||||||||| |||||||| || Sbjct 2373804 CCCCACAAG-GCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTGAA 2373862 Query 48380 GAGAAAGtttt---tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||| ||||| || | ||| ||||||| ||||||||| | | ||||| ||||| Sbjct 2373863 GAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGTACAT 2373919 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 ||| ||||| | ||||| | || | ||||| || || ||||| | ||||||||||| Sbjct 2373920 TTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTGTGAT 2373979 Query 48497 CTGTACCTC 48505 ||| || || Sbjct 2373980 CTGAACTTC 2373988 >seq119 Length=4927305 Score = 131 bits (144), Expect = 2e-25 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| |||||||||||||| | ||||| || || || ||||| || | Sbjct 3027864 CACCACTGAATACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACTGCAATCCTTGCGGCCA 3027805 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | |||||||| ||||| || | || || | || || ||| | || || || ||| ||| Sbjct 3027804 GGATAGCATAGTCAGGGTGCTTGGTGGTCAAGGTCGCAGCTGTCTCGGCAGCCAAAGTAT 3027745 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 ||| || | ||| ||||||||| |||||| |||||| || |||||||||| ||| Sbjct 3027744 CTAGTTCCACAGTGGTGACCCCACTATATAATCCTTGGATTACTTTCATGGTGAT 3027690 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| || |||||||| ||||||||||| || || ||||| ||||| | || Sbjct 3059024 TGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATGGAC 3058965 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| ||||| | | ||||| Sbjct 3058964 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAACTG 3058905 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 3058904 TTTCTAATACCAT 3058892 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | |||||||| ||||| |||||||| || |||||||| || ||| Sbjct 3033757 GTACCAGCATTGAAGAGAGTCGGAGAGGCATGTGTAAACCACTTCTCAGAAAGAAGGTTG 3033698 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || || || |||||||| || | ||| | ||||||| Sbjct 3033697 TATGTTTCAATGGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3033638 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 3033637 ATATGTTGTGGTCTTTCAGCC 3033617 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 3064584 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTCGGCTCAGCAATATGGATGT 3064525 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| |||||||| |||||||||||||| ||||| ||||| || | || || | Sbjct 3064524 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTGTCAGCTGCCATCTTGAGAACTGTTT 3064465 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||| | || || ||| |||||| | ||||| |||| Sbjct 3064464 TCTGTGATATTTCCCACACGGTCTTATAAAGTTGTTTCAGGTCATCAGGAA 3064414 >seq37 Length=21270769 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || ||||| | ||| || ||||||||||| || ||||| ||||| | |||||| Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||| ||||| ||||||||||| || ||||| || ||||| || || Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGC 14837933 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 47788 TGGTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACT 47843 |||||| |||| ||||| |||| || | |||| ||| ||| | || ||||| ||| Sbjct 14836151 TGGTTCCTTTAGAAGTCTGCATCCAAGGTAAAAGAATTGTCTGTTGGACTTGACATCACT 14836210 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 ||||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| Sbjct 14836211 CCCATCCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAG 14836270 Query 47904 ATATTTTCCATAAAATCAAATGGATT 47929 ||||| ||||| || ||||||||||| Sbjct 14836271 ATATTCTCCATGAAGTCAAATGGATT 14836296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694557262240800