Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq61 289 4e-73 seq119 132 7e-26 seq37 116 5e-21 >seq61 Length=12918418 Score = 289 bits (320), Expect = 4e-73 Identities = 627/925 (68%), Gaps = 31/925 (3%) Strand=Plus/Plus Query 46280 TTCTTTAAAAGTCGACATCTAAAG----AAAAATGATTATCTTCTTGT---GACATAACT 46332 ||||||| ||||| |||| || | ||||| ||||||| | | ||||| ||| Sbjct 2373265 TTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCACT 2373324 Query 46333 CCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 46392 ||||| | || || || | ||| | ||||| || || ||||| || ||||||| ||| Sbjct 2373325 CCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAG 2373384 Query 46393 ATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCT 46452 ||||| ||||| || ||||| ||||| || | ||| || | || |||| || Sbjct 2373385 ATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCTCC 2373444 Query 46453 GAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCT 46512 || ||||| || | || ||||| |||||| |||||| | || ||||| || Sbjct 2373445 AGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCCCA 2373504 Query 46513 ATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGAT 46572 ||||| || || || | ||||| ||||| ||||| ||||| || | |||||| | || Sbjct 2373505 ATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTGAG 2373563 Query 46573 -ATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACA 46631 ||||| | | ||| | | ||| ||| || || | |||||| ||||| | || Sbjct 2373564 GATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGGCA 2373623 Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691 ||||| ||||| || | || ||||| || ||||| | ||| || ||||||||||| || Sbjct 2373624 AGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCC 2373683 Query 46692 AGGCATTAGTCC-ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATA 46750 |||||| ||||| | ||||| ||||| ||||| | || || || ||||||||||| | Sbjct 2373684 AGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAGA 2373743 Query 46751 TGCCTTCTACAGCCGCGAATGC---GACAAGTCTCTCTCCGTAACTGGCATCATTATG-- 46805 | ||||| || ||||| || || |||| || ||||| || || || | || Sbjct 2373744 TCCCTTCCACTGCCGCAAAAGCCAGGACACGT---TCTCC-TAGGGAGCCTCTCTGTGTC 2373799 Query 46806 -AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 ||||| || ||||| || ||||| ||||| ||||||||||||||||| ||||||| Sbjct 2373800 CAATCC-CCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCAT 2373858 Query 46865 TAAAGAGAAAGtttt---tttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 | ||||| ||||| || | | ||||||| || ||||| | | ||||| | Sbjct 2373859 TGAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGT 2373915 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||||| || || ||||||| | || | ||||| || || ||||| | ||||| | Sbjct 2373916 ACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTG 2373975 Query 46982 TAATCTGTACCTCTGTACAAAA---TCGTTCAGACAAATTCTCATTCACTATTCCATCAC 47038 | ||||| || ||| | ||| | | || || |||||| | || || || || Sbjct 2373976 TGATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-G 2374034 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT 47098 || || || || |||| | || | || || | || |||| | || | Sbjct 2374035 GGGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGT 2374094 Query 47099 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTG 47158 || || | ||| || || || | | ||||| || || |||||||| |||||||| | Sbjct 2374095 CCCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGG 2374154 Query 47159 CTTTTTTATACATATTCCATATATC 47183 | || | ||||| | ||| ||||| Sbjct 2374155 CCTTCCTGTACATCTGCCAGATATC 2374179 >seq119 Length=4927305 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| || |||||||| ||||||||||| || || ||||| ||||| | || Sbjct 3059024 TGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATGGAC 3058965 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| ||||| | | ||||| Sbjct 3058964 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAACTG 3058905 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 3058904 TTTCTAATACCAT 3058892 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||| || || |||||| ||| |||| || || ||||| || | Sbjct 3064584 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTCGGCTCAGCAATATGGATGT 3064525 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| |||||||| |||||||||||||| ||||| ||||| || | || || | Sbjct 3064524 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTGTCAGCTGCCATCTTGAGAACTGTTT 3064465 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||| | || || ||| |||||| | ||||| |||| Sbjct 3064464 TCTGTGATATTTCCCACACGGTCTTATAAAGTTGTTTCAGGTCATCAGGAA 3064414 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| |||||||||||||| | || || || || || || || || || || Sbjct 3027859 CTGAATACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACTGCAATCCTTGCGGCCAGGATA 3027800 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | || || |||| || ||| | || || || |||||||||| | Sbjct 3027799 GCATAGTCAGGGTGCTTGGTGGTCAAGGTCGCAGCTGTCTCGGCAGCCAAAGTATCTAGT 3027740 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| || || || |||||| ||||| || |||||||||| Sbjct 3027739 TCCACAGTGGTGACCCCACTATATAATCCTTGGATTACTTTCATGG 3027694 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 3033757 GTACCAGCATTGAAGAGAGTCGGAGAGGCATGTGTAAACCACTTCTCAGAAAGAAGGTTG 3033698 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| || |||||||| |||| || | ||||||| Sbjct 3033697 TATGTTTCAATGGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3033638 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 3033637 ATATGTTGTGGTCTTTC 3033621 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 ||||||| | ||||| | |||||||| ||||||||||| ||||||| |||||||| Sbjct 3050489 TTTCATACCTTTCATATAGCTTCTCAAATTCTTCTCCCCAAACCTCATCCAGACCAGGAC 3050430 Query 76557 ATTCATTCGGACACATCAATGACCACTC 76584 | ||||||||||||||||| ||||| || Sbjct 3050429 ACTCATTCGGACACATCAAAGACCAGTC 3050402 >seq37 Length=21270769 Score = 116 bits (128), Expect = 5e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || ||||| | ||| || ||||||||||| |||||||| ||||| | ||||| Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||| ||||| ||||||||||| || ||||| || |||||||| || Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGCC 14837934 Query 46774 AC 46775 || Sbjct 14837935 AC 14837936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712819929470400