Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq21 123 6e-23 seq13 123 6e-23 seq1111 122 2e-22 seq134 114 3e-20 seq57 111 4e-19 seq16 107 4e-18 seq29 102 2e-16 seq107 100 7e-16 seq94 96.9 8e-15 seq255 95.1 3e-14 seq5 89.7 1e-12 seq69 84.2 5e-11 seq4 84.2 5e-11 >seq21 Length=29177037 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| |||||||||||||| || | ||||| | Sbjct 16234647 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGT 16234706 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| | ||||| || || | | ||||||||| Sbjct 16234707 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCC 16234766 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| | || || || || || ||||| Sbjct 16234767 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTG 16234826 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || ||||| || || |||||||| | |||||| || Sbjct 16234827 ATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 16234867 >seq13 Length=31987310 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| |||||||||||||| || | ||||| | Sbjct 25852500 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGT 25852559 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| | ||||| || || | | ||||||||| Sbjct 25852560 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCC 25852619 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| | || || || || || ||||| Sbjct 25852620 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTG 25852679 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || ||||| || || |||||||| | |||||| || Sbjct 25852680 ATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 25852720 >seq1111 Length=9394 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||| || || |||||||| ||||||||||| || | | || | ||||| || || Sbjct 113 AGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGC 172 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 ||| || || || || || ||||||||||| || ||| |||||||| || || ||| Sbjct 173 TGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATT 232 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTG 152075 || ||||| | |||| | | |||| ||| |||||| || || || || || ||| Sbjct 233 TTGGCTTTGATATTCTCAATGGTGTC---ACTGGGCTCTACCTCGAGGGTGATGGTCTTG 289 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| |||| |||||| Sbjct 290 CCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq134 Length=4000202 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| |||||||||| ||| || | ||||| | | Sbjct 2759343 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACAC 2759402 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| | ||||| || || | | ||||||||| Sbjct 2759403 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCC 2759462 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| | || || || || | ||||| Sbjct 2759463 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTG 2759522 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || ||| | || || |||||||| | |||||| || Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 >seq57 Length=13814656 Score = 111 bits (122), Expect = 4e-19 Identities = 158/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||||||| |||| || | ||||| | Sbjct 7965730 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGT 7965671 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| ||||| || || | | ||||||||| Sbjct 7965670 CCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGAATTCCTTCC 7965611 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||||| | || | || || || ||||| Sbjct 7965610 TTATCCTGGATCTTGGCCTTGACATTTTCTACG-TATCCAAGGGTTCGACCTCGAGAGTG 7965552 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || ||| |||| || |||| ||| ||||||| || Sbjct 7965551 ATAGTCTTCCCCATGAGGGTTTTCATGAAATCCTGCATCTT 7965511 >seq16 Length=30823778 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||| |||| ||||||||||| || || | ||||| | |||||||| Sbjct 1301372 ACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGACAAAGTACGTCCATCTTCA 1301431 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || || ||||| | ||||| || || | | ||||||||||| || || Sbjct 1301432 AGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGG 1301491 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || |||||| | |||| | || || | || || ||||| ||||| || Sbjct 1301492 ATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGAGTGATAGTCTTC 1301551 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| | |||||| || Sbjct 1301552 CCCGTAAGGGTTTTCACGAAAATCTGCATCTT 1301583 >seq29 Length=25414214 Score = 102 bits (112), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 151887 AGTCTGAGGACA-AGATGAAGAGTAGACTCTTTTTGGATGTTGT-----------AATCG 151934 ||||| | ||| ||||||||||| ||||||||||||||||||| | || Sbjct 3398952 AGTCTCAAAACAGAGATGAAGAGTGGACTCTTTTTGGATGTTGTTTGGATATTGTAGTCA 3399011 Query 151935 GCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCC 151994 | ||||| | |||||||| || ||| || || ||||| | |||| ||||| | Sbjct 3399012 GACAAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTATTGGTCAGAT 3399071 Query 151995 GAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCT 152054 | ||||||||||| || || || || |||||| | |||| | ||||| | Sbjct 3399072 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCTGAGGGTTTG 3399131 Query 152055 ACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| ||||| || ||||| || || ||||| || | |||||| || Sbjct 3399132 ACCTCAAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATCTT 3399184 >seq107 Length=6112886 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||||||| | ||||| |||||||||||||| || | ||||| |||||||| || Sbjct 2237186 AGATGAAGAATGGACTCATTTTGGATGTTGTAGTCAGACAAAGTATGTCCATCTTCAAGT 2237127 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 ||| || |||||||| | || || || || | | ||||||||||| || || || Sbjct 2237126 TGTTTACCAGCGAAGATCAATCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 2237067 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||||| | |||| | ||||| || || || ||||| ||||| || ||| Sbjct 2237066 TTGGCCTTGACATTTTCTATCATATCTGAGGGTTCGACCTCCAGAGTGATAGTCTTTCCC 2237007 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 | || || || | || | |||||| ||| Sbjct 2237006 ATAAGGGTTTTTATGAGAATCTGCATCTTA 2236977 >seq94 Length=7567239 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| || |||||||| || | | ||| | |||||| Sbjct 6929606 AGGACAAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 6929665 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | ||| |||||||| || Sbjct 6929666 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 6929725 Query 152013 TGAATTTT 152020 || || || Sbjct 6929726 TGGATCTT 6929733 >seq255 Length=264719 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 || || || || |||||||| ||||||||||| || | | || ||||| || || Sbjct 227514 AGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCAGC 227573 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 ||| || | || || || | |||||| |||| | ||| |||||||| || || ||| Sbjct 227574 TGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGATT 227633 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTG 152075 || ||||||| |||| | |||| ||| |||||| | || || || || ||| Sbjct 227634 TTAGCTTTGACATTCTCAGTGGTGTC---ACTGGCCTCTACCTTGAGGGTGATGGTCTTG 227690 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| |||| ||||| Sbjct 227691 CCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 >seq5 Length=50938590 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||||||||| ||||| |||||||||| ||| || | ||| | |||||||| | Sbjct 5964012 AGATGAAGAGTGGACTCCTTTTGGATGTAGTAGTCAGACTAAGCACGTCCATCTTCAACT 5963953 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 ||| | || ||||| | || || || | | | |||||||||||||| || || Sbjct 5963952 TGTTTACGAGCAAAGATCAATCTTTGTTGATTGGGAGGAATTCCTTCCTTTTCCTGGATC 5963893 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||||| | |||| | ||||| || || || ||||||| |||||| ||| Sbjct 5963892 TTGGCCTTGACATTTTCTATTGTAACTGAAGGTTCCACCTCGAGAGTAAAAGTTTTCCCC 5963833 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | ||||| || | |||||| || Sbjct 5963832 ATAAGGATTTTCACAAAAATCTGCATCTT 5963804 >seq69 Length=11345371 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||||||||||| || | |||| | Sbjct 5552177 AGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGACAAAGCACAT 5552118 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | ||||| || || | |||||||| Sbjct 5552117 CCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGAATTCCTTCT 5552058 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || | || |||||| | |||| | || || || || || ||||| Sbjct 5552057 TTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTG 5551998 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || |||| || || ||||| || | || ||| || Sbjct 5551997 ATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACATCTT 5551957 >seq4 Length=51989874 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || |||| |||||||||||||| ||||| |||||||||||||| || | ||||| Sbjct 2293882 AGCCTGAAAACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTATGT 2293823 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||| |||| || ||| || || |||| | || ||||| | | ||||||||| Sbjct 2293822 CCAGCTTCAAGTTGTTTACCAGCAAAGACTAATCTTTGCTGACCAAGAGGAATTCCTTCC 2293763 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||| | | ||| | |||| | ||||| | || | |||||| Sbjct 2293762 TTATCCTGAACCCTGGCCTCTACATTTTCTATTGTATCTGAGGGTTGAACCTTGAGAGTA 2293703 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || || || ||||| || | |||||| || Sbjct 2293702 ATAGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 2293662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153630908138995