Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq21 118 8e-22 seq13 118 8e-22 seq1111 113 3e-20 seq134 105 5e-18 seq16 105 5e-18 seq255 104 2e-17 seq69 86.0 5e-12 seq57 86.0 5e-12 >seq21 Length=29177037 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| || || ||||| ||| |||||||||||||||||| || | | || Sbjct 16234647 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGT 16234706 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || || || || ||||||||||| | ||| ||||| | || | |||||| Sbjct 16234707 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCC 16234766 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || || | || ||| ||||| | || Sbjct 16234767 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTG 16234826 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| |||||||| || ||||| Sbjct 16234827 ATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| || || ||||| ||| |||||||||||||||||| || | | || Sbjct 25852500 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGT 25852559 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || || || || ||||||||||| | ||| ||||| | || | |||||| Sbjct 25852560 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCC 25852619 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || || | || ||| ||||| | || Sbjct 25852620 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTG 25852679 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| |||||||| || ||||| Sbjct 25852680 ATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq1111 Length=9394 Score = 113 bits (124), Expect = 3e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 |||| || || ||| ||| || ||||||||||| || | ||| ||| | || |||| Sbjct 111 CCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCA 170 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 |||| || || ||||| |||| | ||||||| || | || | |||||||| ||| | Sbjct 171 GCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGA 230 Query 44250 TCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 | || |||| || ||| | |||||||| || || ||||| | || || ||||| Sbjct 231 T-TTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTG 289 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||| ||||| ||||| Sbjct 290 CCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq134 Length=4000202 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| || || ||||| ||| |||||||||||||| ||| || | | | | Sbjct 2759343 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACAC 2759402 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || || || || ||||||||||| | ||| ||||| | || | |||||| Sbjct 2759403 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCC 2759462 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || || | || ||| |||| | || Sbjct 2759463 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTG 2759522 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||| | ||||| |||||||| || ||||| Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq16 Length=30823778 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || ||||| || || ||||| ||| ||||||||||||||| || || | | || Sbjct 1301363 AGCCTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGACAAAGTACGT 1301422 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || || || || ||||||||||| | ||| ||||| | || | |||||| Sbjct 1301423 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCC 1301482 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || || | || || ||||| | || Sbjct 1301483 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGAGTG 1301542 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| |||||||| || ||||| Sbjct 1301543 ATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1301580 >seq255 Length=264719 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 ||||||| || ||| ||| || ||||||||||| || | ||| | | | || |||| Sbjct 227512 CCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCA 227571 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 |||| || || |||| |||| |||||||||||| | | | |||||||| ||| | Sbjct 227572 GCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGA 227631 Query 44250 TCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 | || |||| | ||| | ||||||| || || |||| | || || ||||| Sbjct 227632 T-TTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTCTTG 227690 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||| ||||||||||| Sbjct 227691 CCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 >seq69 Length=11345371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| |||||||| || || ||||| ||| |||| ||||||||||||| || | Sbjct 5552186 CCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGAC 5552127 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | | | || || || || || || ||||| ||||| | ||| ||||| | | Sbjct 5552126 AAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGA 5552067 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| || ||| | ||| ||| | || |||| || || | || ||| ||| Sbjct 5552066 ATTCCTTCTTTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGACC 5552007 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| |||| ||||| ||||| || || | ||| Sbjct 5552006 TCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACAT 5551960 >seq57 Length=13814656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| || || ||||| ||| ||||||||||||| |||| || | | || Sbjct 7965730 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGT 7965671 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || || || || ||||||||| | | ||| ||||| | || | |||||| Sbjct 7965670 CCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGAATTCCTTCC 7965611 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || ||| || || || ||| ||||| | || Sbjct 7965610 TTATCCTGGATCTTGGCCTTGACATTTTCTA-CGTATCCAAGGGTTCGACCTCGAGAGTG 7965552 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 || ||||| ||| ||||||| |||| ||| Sbjct 7965551 ATAGTCTTCCCCATGAGGGTTTTCATGAA 7965523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359934044065365