Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq67 226 4e-54 seq65 105 1e-17 >seq67 Length=11548157 Score = 226 bits (250), Expect = 4e-54 Identities = 245/325 (75%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 8261 GCCTTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTG 8320 |||||| || | || | || | || | ||| || | | ||| || |||||||||||| Sbjct 1432089 GCCTTGGGGGGGGCCGCGTCCTGCACGCTGAAGGCCGTGAGCGGGCAGCCCTTGACGTTG 1432030 Query 8321 CTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCG 8380 |||| || ||||| | | ||| | |||||||||| ||| ||||| || || ||| Sbjct 1432029 TGGCAGATCAGGGACTGGAGGGAGGCGGTGTTGACGATCCGGAAGCCCACCTCGCCCCCG 1431970 Query 8381 AAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGG 8440 |||||||| |||||||||||| | || ||||||||| ||| |||||||||| || ||| Sbjct 1431969 AAGGTGCTCGGCTTCCAGTACTCGGGCGAGCAGATGGGGTTGCCCATGAGGCCCTTCAGG 1431910 Query 8441 GAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTT 8500 ||||| || ||||||| ||| | ||| |||| ||||||||||||| || |||||||| Sbjct 1431909 GAGAAGGGGGCCCCCAGCTCCACCATGGTCTCCCCGAAGATGGCGTCCGGCCGGGGCTTC 1431850 Query 8501 TCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGT 8560 ||||||| || ||| ||||||||||| || |||| ||| ||||| || ||| || Sbjct 1431849 TCCACCAGGAGGGCGGGGTACAGCTCCATGGCGTCGATGTCACCGTACAGCGCCTCCAGC 1431790 Query 8561 TCGGCAGCGATCTCCTTTTCTCCTG 8585 || | || |||||||| || |||| Sbjct 1431789 TCCGAGGCCATCTCCTTCTCCCCTG 1431765 Score = 152 bits (168), Expect = 7e-32 Identities = 189/257 (74%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | || || || |||||||||| || |||||||| | ||| || || || Sbjct 1428478 TCACCGATCAGTATCAGCCGGCTGGTCTGGAAGAGCTGCTCGTCCCCCCACTCGGGGTGC 1428419 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||| || || ||||||| |||||| |||| |||||||| |||||||||||| Sbjct 1428418 TCCTGCCGCAGCACGTCACACACCCGGTTGTGCTCCCGAAGCCAGATGGTGGCGTACATC 1428359 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||||| || |||| || || ||| || || || || | |||| || || ||| Sbjct 1428358 ATGAGCCCTGGCACCATCCCGAACAGCTCCTGGCCCACGGCAAAGCGCAGGTGCTCCGGC 1428299 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCT--TTGACCGAGGGGGGATACATTT 9469 || | ||| || ||||||||| | |||| ||||| ||| | ||| || ||||| | Sbjct 1428298 ACGTGGGGCGGGTAGATCATGGCCGCCTG--CGTCTCCCCGACGGTGGGCGGGTACATCT 1428241 Query 9470 CACCGTCAATCATCTGA 9486 | ||||| || |||||| Sbjct 1428240 CCCCGTCGATGATCTGA 1428224 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 || |||||||| |||| || || |||||||| || || ||| || ||| | || Sbjct 1427334 CTCACCCCATGGCCCAAGCCCTTGGTGAAGGCTGGCCCCCGCTTATGGTCCGTCTTGAAG 1427275 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||| || ||| | || ||||||||||| | |||||||||||| || ||| Sbjct 1427274 AACTGGTGGGTGAAGTGCTGGGCGAAGAAGGCAAACATCATGTTGGTGCCCTGCGGGTCG 1427215 Query 9770 GGAGTGAAGGTCCTCC 9785 || |||| |||||| Sbjct 1427214 GGGATGAACTTCCTCC 1427199 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 8693 TCACCTGTGAGTTCTTCGAACGACTCGTAGGGTTTTAACCTGAACCGCTTTCTGTACTGG 8752 ||||||||||| || ||||| ||| |||||| || | | | || ||||| | ||||| | Sbjct 1430764 TCACCTGTGAGCTCCTCGAAGGACCTGTAGGGCTTGAGCATAAAGCGCTTGCGGTACTCG 1430705 Query 8753 TTGAGGGATTGAAACCTCATTTCGCGACCATGTTCTATAGCCGCCCGGGAGACCCTTCTG 8812 |||| ||| || ||||||| || || | || || || | |||| ||| | ||||||| Sbjct 1430704 TTGAAGGACTGGTACCTCATCTCCCGGCTCTGGTCGATGGACGCCTGGGCCA-CCTTCTG 1430646 Query 8813 -AGGGCGGGGGGTACGTTCCTGCCGCC 8838 | ||| |||| |||||||| || || Sbjct 1430645 CACGGCAGGGGCCACGTTCCTCCCTCC 1430619 >seq65 Length=11877709 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || ||||||||||| || |||||||| ||| || || Sbjct 11174828 TCACCGATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGGTGC 11174887 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| |||| |||||||| |||||||||| | Sbjct 11174888 TCGGCCTTCAGCAGGTCACACACGCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACAGC 11174947 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| || || |||| || || || |||| Sbjct 11174948 ATGAGCCCCGGGAGCAGCCCGAACACCTCCTGGCCCACGGCCA 11174990 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 ||||| || || || || |||||||||||| |||| || |||||| ||| | | ||| Sbjct 11165752 TCTCCACCAAATGTACTTGGCTTCCAGTACTCCGGAGAACAGATGGGATTCCCTAGGAGA 11165811 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 || |||||||| || |||||||| | || | || ||||| || || |||| ||| || Sbjct 11165812 CCCTTGAGGGAAAAAGGAGCCCCAATTTCTATCATACTCTCCCCAAAAATGGAGTTTGGG 11165871 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 || ||| |||| | | ||| | ||| | ||||| || |||| |||||| || Sbjct 11165872 TGGCACTTCTCCAGAAGCAGTCCCGGGTAGAACTCCAAGGCATCGATGTCTCCATA 11165927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716761696468800