Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq21 149 2e-30 seq13 149 2e-30 seq16 140 8e-28 seq1111 134 3e-26 seq134 132 1e-25 seq57 118 3e-21 seq4 116 9e-21 seq69 113 1e-19 seq5 109 1e-18 seq94 104 6e-17 seq121 102 2e-16 seq28 87.8 4e-12 >seq21 Length=29177037 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| ||| ||| || Sbjct 16234861 CAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTCGGAT 16234802 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || |||||||| || || || || || Sbjct 16234801 ACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAACAG 16234742 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||| | ||| | | || || ||| || Sbjct 16234741 AGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAACATC 16234682 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| ||||||||||| Sbjct 16234681 CAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACT 16234647 >seq13 Length=31987310 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| ||| ||| || Sbjct 25852714 CAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCCTCGGAT 25852655 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || |||||||| || || || || || Sbjct 25852654 ACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAACAG 25852595 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||| | ||| | | || || ||| || Sbjct 25852594 AGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAACATC 25852535 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| ||||||||||| Sbjct 25852534 CAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACT 25852500 >seq16 Length=30823778 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| || ||| || Sbjct 1301577 CAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCAAACCCTCGGAT 1301518 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || |||||||| || || || || || Sbjct 1301517 ACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAACAG 1301458 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||| | ||| | | || |||||| || Sbjct 1301457 AGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTATAACATC 1301398 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || ||||| |||||||| || Sbjct 1301397 CAAAAGGAGTTCACTCTTCATCTCGTTTTGAGGCT 1301363 >seq1111 Length=9394 Score = 134 bits (148), Expect = 3e-26 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||||||||| || || ||| Sbjct 315 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTAGA--GCCCAGTG 258 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||| ||||| ||||| |||||||||| Sbjct 257 ACACCATTGAGAATATCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCGCCGGACCAGC 198 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || |||||||| || ||||| | || || | || || ||| Sbjct 197 AGCCTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAACA 138 Query 178102 TCCAAAAAGAATCAACACTGCATCT 178126 |||| ||||| || || |||||||| Sbjct 137 TCCAGAAAGAGTCCACCCTGCATCT 113 >seq134 Length=4000202 Score = 132 bits (146), Expect = 1e-25 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || | || || || ||||| ||| |||| ||| ||| || Sbjct 2759557 CAGATTTTCGTGAAAACCCTTATGGGGAAGACTATCACTCTCAAGGTCGAACCCTCGGAT 2759498 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || |||||||| || || || || || Sbjct 2759497 ACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCAACAG 2759438 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || |||||||| | ||| | | || || || || Sbjct 2759437 AGATTGATCTTTGCTGGTAAACAACTTGAAGATGGGTGTACTTTGTCAGACTACCACATC 2759378 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGAC-TCAGA 178142 ||||| || || || || ||||| |||||||||| ||||| Sbjct 2759377 CAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCAGA 2759338 >seq57 Length=13814656 Score = 118 bits (130), Expect = 3e-21 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||| ||||||| |||| || || || ||||| |||||||| ||| || || || | Sbjct 7965522 TTTCATGAAAACCCTCATGGGGAAGACTATCACTCTCGAGGTCGAACCCTTGGATACG-T 7965580 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||| ||||| || |||||||| || || || || || || Sbjct 7965581 AGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCCGATCAACAGAGATG 7965640 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || ||||| || ||||||||| | ||| | | || || | | ||||||| Sbjct 7965641 GATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTACAGCATCCAAAA 7965700 Query 178109 AGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || ||||| ||||||||||| Sbjct 7965701 GGAGTCCACTCTTCATCTCGTTTTGAGACT 7965730 >seq4 Length=51989874 Score = 116 bits (128), Expect = 9e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| || ||||| || || || || ||| |||| || |||||| Sbjct 2293668 CAGATTTTTGTGAAAACCCTTACAGGGAAGACTATTACTCTCAAGGTTCAACCCTCAGAT 2293727 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || | | | ||||||| || |||||||| |||| | |||||| Sbjct 2293728 ACAATAGAAAATGTAGAGGCCAGGGTTCAGGATAAGGAAGGAATTCCTCTTGGTCAGCAA 2293787 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 || | |||| || || ||||| || |||| |||| ||| ||||| || || ||| | Sbjct 2293788 AGATTAGTCTTTGCTGGTAAACAACTTGAAGCTGGACATACT-TTGCCTGACTACAACAT 2293846 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||| || || || || ||||||||||| || || Sbjct 2293847 CCAAAAGGAGTCCACTCTTCATCTTGTTTTCAGGCT 2293882 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||| ||||| ||||| | || || || ||||| |||||||| ||| || || || Sbjct 38965635 ATTTTTGTGAAGACTCTTATGGGGAAGACTATCACTCTCGAGGTTGAACTCTTGGATACG 38965576 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 | || || ||||| |||| ||||| ||||||||| | || || | || | | Sbjct 38965575 AAAGAAAATGTCAAGGCCAAGACCCAGGATAAAGAAGGATTTCCACCCAATCAATAGAAA 38965516 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | ||||| || || ||||| || ||||||||| | ||| | | || || || |||| Sbjct 38965515 TTGATCTTTGCTGGTAAACAACTTGAAGATGGATGTACTTTGTCTGACTACAATATCCAG 38965456 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || ||||||||||||||||| Sbjct 38965455 ---GAGTCCACTCTTCATCTTGTTTTGAGACT 38965427 >seq69 Length=11345371 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || || |||||||| || | || || || ||||| || ||||| ||| ||| || || Sbjct 5551966 ATGTTTGTGAAAACCCTTTCGGGGAAGACTATCACTCTGGAGGTCGAACCCTCGGATACA 5552025 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || ||||| ||| | ||||| ||||||||||| | || || || || || Sbjct 5552026 ATAGAAAATGTCAAGGCCAAGTTCCAGGATAAAGAAGGAATTCAACCCGATCAACAGAGA 5552085 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | || || || || ||||| || ||||||||| | || | | || || ||| ||||| Sbjct 5552086 TTGATTTTTGCTGGTAAACAACTTGAAGATGGATGTGCTTTGTCTGACTACAACATCCAA 5552145 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || || || || ||||| ||||||||||| Sbjct 5552146 AGGGAGTCCACTCTTCATCTCGTTTTGAGACT 5552177 >seq5 Length=50938590 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||| || | || ||||| | || |||||||||||| |||| Sbjct 5963810 CAGATTTTTGTGAAAATCCTTATGGGGAAAACTTTTACTCTCGAGGTGGAACCTTCAGTT 5963869 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || |||||||| ||||| | || ||| Sbjct 5963870 ACAATAGAAAATGTCAAGGCCAAGATCCAGGAAAAGGAAGGAATTCCTCCCAATCAACAA 5963929 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || | ||||| | ||||||||| | || | || || || || Sbjct 5963930 AGATTGATCTTTGCTCGTAAACAAGTTGAAGATGGACGTGCTTAGTCTGACTACTACATC 5963989 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| |||||||||| Sbjct 5963990 CAAAAGGAGTCCACTCTTCATCTCATTTTGAGACT 5964024 >seq94 Length=7567239 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| ||||| || ||||| ||||| || |||||||| | || ||||| ||||| || Sbjct 6929733 AAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 6929674 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| | |||||| | || || ||| | || ||||| || || |||||| Sbjct 6929673 CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATTCAGAAAGAGTCGACCCTGCAT 6929614 Query 178125 CTTGT 178129 ||||| Sbjct 6929613 CTTGT 6929609 >seq121 Length=4665274 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||||||| ||||| ||||| ||||| || || | ||||| || |||||||| Sbjct 2221547 CACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGAGCATCCCCCCTGACCAGCA 2221488 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | || ||||| ||||| || ||||| |||||||| | || || | || || ||| | Sbjct 2221487 GAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACAT 2221428 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| |||||||| || ||||| |||| Sbjct 2221427 CCAGAAAGAATCCACTCTGCA-CTTG 2221403 >seq28 Length=26224161 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||| ||| || | ||||| || || || || ||| | ||| ||| || Sbjct 950386 CAGATTTTTGTGATAACCCTTATGGGAAAGACTATTACTCTAGAGTTTGAACTCTCGGAT 950327 Query 177984 ACCATCGAGA-ACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 | || | | | ||||| || || |||| || |||||||| | || ||||| Sbjct 950326 ATGATAAAAAGATGTCAAGGCCAACATCCAGGGTAAGGAAGGAATTTC----GATCAGCA 950271 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | || | ||||| || || ||||| |||||||||||| | ||| | | || || ||| | Sbjct 950270 AAGATTGATCTTTGCTGGTAAACAACTCGAAGATGGATGTACTTTGTCTGACTACAACAT 950211 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||| | | || || ||||| |||||||||| Sbjct 950210 CCAAAAGATACCCACTCTTCATCTCCTTTTGAGACT 950175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203533094056930