Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1111 127 2e-24 seq49 104 2e-17 seq46 96.9 3e-15 seq121 95.1 1e-14 seq96 89.7 5e-13 seq94 89.7 5e-13 >seq1111 Length=9394 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| | ||| || || | | |||||||||| ||| ||| ||||| ||||| ||||| || Sbjct 91 GCCCCTGCGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 150 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||| ||||| || || ||||| |||| ||||||| || Sbjct 151 GAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGG 210 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| || | | | ||||| || | ||| || Sbjct 211 GATGCCTTCCTTGTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTAC 270 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || |||||||| ||||| || || |||||||| Sbjct 271 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq49 Length=15761451 Score = 104 bits (114), Expect = 2e-17 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || ||||| | | |||||| ||||| ||| ||| ||||| ||||| |||| |||||| Sbjct 14388138 CCACGTAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGG 14388197 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| | || || ||||| ||||| || || ||||| ||| ||||| | || | | Sbjct 14388198 GTGCGGCCATCTTCCAGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATG 14388257 Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA---GTGTCGCTCGACTCCACC 41815 | |||||||||| || |||| |||| || | | || ||||| || | |||| || Sbjct 14388258 CACTCCTTGTCC-TGGATTTTGGCTTTGAC--AGTCTCAGTGGTGTCACTGGTCTCCCCC 14388314 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | | || || || | ||| ||| ||||| || || |||||||| Sbjct 14388315 TGGAGGGTGATGGTCTCGCCCATCAAGGTCTTCACAAAGATCTGCAT 14388361 >seq46 Length=16750451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| |||||||| ||||| |||||||| |||||||| | || || Sbjct 1815901 ACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 1815842 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 |||||||||||||| || ||||| | ||| ||||| | ||| | || |||||| || Sbjct 1815841 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 1815786 >seq121 Length=4665274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| || ||||| ||||| ||||| || |||||||| | || || Sbjct 2221401 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 2221460 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | ||| | ||||||||| ||| | Sbjct 2221461 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCTCTCCTTATCCTGG 2221520 Query 41774 ATTTT 41778 || || Sbjct 2221521 ATCTT 2221525 >seq96 Length=7287561 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||||||||| ||| ||| | ||| ||||| | || ||||||||||| | | || Sbjct 3530335 CACCAGATGCAGGGTGGACTCTTCCTGGATGTTGTGGTTCGAGAGGGTGCGGCCACCCTC 3530394 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| ||||| || || ||||| ||||| ||||| | | | || ||||||||| Sbjct 3530395 CAGCTGTTTGCCCGCAAAAATCAGACGCTGATGGTCTGGCAGGATGCCTTCCTTGTCCTG 3530454 Query 41773 GATTTTTTGCTT 41784 ||||||| |||| Sbjct 3530455 GATTTTTGGCTT 3530466 >seq94 Length=7567239 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| || ||| ||||||||||| ||||| || || ||||| Sbjct 6929600 AGACGCAGGACAAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGG 6929659 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | ||| | || ||| Sbjct 6929660 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 6929719 Query 41765 TTGTCCATGATTTTTTGCTTCA 41786 || ||| ||| || ||||| Sbjct 6929720 TTATCCTGGATCTTGGCCTTCA 6929741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462229771314000