Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq15 215 5e-51 seq3 111 2e-19 seq4 84.2 2e-11 >seq15 Length=140412725 Score = 215 bits (238), Expect = 5e-51 Identities = 580/875 (66%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || | ||||| || || || || || Sbjct 19879711 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGT 19879652 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || || | |||| Sbjct 19879651 GAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGA--AGCCCA 19879594 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || | | ||| || || || || || || || || |||||| ||| |||| Sbjct 19879593 GCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCA 19879534 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC-T 16900 | || | || ||||| || | || | || || || ||||| ||| || | Sbjct 19879533 TCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCAT 19879474 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 | | | || | || || ||| | ||| || ||| | ||| || |||| |||||| Sbjct 19879473 TGATGATTATTTCTTTCA-CTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATC 19879415 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| ||||| ||||| |||||||| ||| || | Sbjct 19879414 AGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAATACGT--------------C 19879369 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| |||||||||||| | ||| ||| | | || || || ||||||||| Sbjct 19879368 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAG 19879309 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT--CGCGTCTTTGT 17138 || || || || |||| ||||| | ||| | ||||| | |||| || ||||||| Sbjct 19879308 AAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCC--ACGTGGAGCCTCTTTGT 19879251 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | ||||| | | |||| || || | | ||||| ||| ||| || || |||| Sbjct 19879250 CCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGG 19879191 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | || | || | || || ||||| ||||| ||||| Sbjct 19879190 CATTGAAGAGAAATTCGCTTTCT-TTGGA-ATCTTTGATGTAAGTATCAATGAGGAGGCT 19879133 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||||| || |||||||| |||||||| || || || || || || || || ||||| Sbjct 19879132 ATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTC 19879073 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||| ||| | || | ||| | | ||||| | ||||||||| || || Sbjct 19879072 TGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACT 19879013 Query 17377 CGCGGCGAAAAACGCCAATAT-ATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC 17435 || || || || ||||| || ||| ||| |||||| | || | || | | Sbjct 19879012 TGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTT 19878953 Query 17436 GCCAGTCCTTTAAAT--CTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 ||||| || ||| | ||||| | |||| || || | |||||||| |||| | Sbjct 19878952 CCCAGT--GTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTC 19878895 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 |||||| |||||||| | ||| || |||| ||||| Sbjct 19878894 TGCCTTCTTATACATCTGCCAGATGTCATGGTATT 19878860 >seq3 Length=132848913 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| ||||||||||| ||||| |||| || |||||| ||||||||||| Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || |||||||||||||| || || || |||| ||||| | Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 17106 C 17106 | Sbjct 126361097 C 126361097 >seq4 Length=130910915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| ||||| || ||||| || | || ||||| |||| ||||| Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||||||| ||||| || || || || || || ||||| || || || || | ||||| | Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 17106 C 17106 | Sbjct 34847539 C 34847539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541634306840