Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15 242 4e-59 seq4 107 2e-18 seq3 102 8e-17 >seq15 Length=140412725 Score = 242 bits (268), Expect = 4e-59 Identities = 590/888 (66%), Gaps = 27/888 (3%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || ||||||| || || || || | Sbjct 19879711 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGT 19879652 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||||||||| || ||||||| ||| | | |||| Sbjct 19879651 GAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAAC--CTTGCTGAAGCCCA 19879594 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | ||| ||||| || || || || || || |||||| |||||| | Sbjct 19879593 GCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCA 19879534 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || | || ||||| || | | | | || || | ||||||||| ||| || | Sbjct 19879533 TCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCAT 19879474 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 | || || || | ||| || || ||| | || ||| |||| ||||| | Sbjct 19879473 TGATGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATCA 19879414 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 | || || |||||||| |||| || || |||||||| ||| || | Sbjct 19879413 GGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAATACGTCAGG------------ 19879366 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| |||||||||||| | ||||||| | | ||||| || || ||||||| Sbjct 19879365 --CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGA 19879308 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGT--TCCGCGTACGTAGCATCTTTATT 16377 | || || || || | ||||| | ||| | ||| ||| ||| | ||| ||||| | Sbjct 19879307 AAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGT--GGAGCCTCTTTGTC 19879250 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | ||||| | | |||| || || | | |||| |||| ||| || || ||||| Sbjct 19879249 CCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGC 19879190 Query 16438 CTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | | || ||| |||| | || ||| | || || |||||||| || | || Sbjct 19879189 ATTGAAGAGAAATTCGCTTTCTTTGGA--ATCTTTGATGTAAGTATCAATGAGGAGGCTA 19879132 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| || |||||||| || ||||| || || || |||||||| || ||||| || Sbjct 19879131 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCT 19879072 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || | ||| | ||| | ||| ||| ||| |||| |||||| || |||||| Sbjct 19879071 GTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTT 19879012 Query 16616 GCAGCAAAAAACGCCAATATG-TGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 || ||||| || ||||| ||| || ||| |||||| | || | || | | | | Sbjct 19879011 GCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTC 19878952 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | || | | ||||| | |||| || || | ||||||||| |||| |||| Sbjct 19878951 CCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGC 19878892 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||| |||||||| | ||| || |||| ||||| || ||||| | ||| Sbjct 19878891 CTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGAC 19878844 >seq4 Length=130910915 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| ||||| |||||||| || | || ||||| |||| ||||||| Sbjct 34847657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 34847598 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 ||||||||||| |||||||| || ||||| ||||| || || || |||| ||||| || Sbjct 34847597 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 34847539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 34856207 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 34856148 Query 15985 GGGATT 15990 |||||| Sbjct 34856147 GGGATT 34856142 >seq3 Length=132848913 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| ||||||||||||||||| || | || ||||| |||||||||||| Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| ||||| |||||||| || || || || | ||||| || Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGC 126361097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410481287160