Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 470 1e-127 seq7 138 8e-28 seq2 129 4e-25 seq6 86.0 5e-12 >seq1 Length=274330532 Score = 470 bits (520), Expect = 1e-127 Identities = 456/582 (78%), Gaps = 7/582 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||| || ||||||||||| ||||||||||| | |||| Sbjct 31910345 AAAACACTTTCACATTAATTGTTCTTTTCCTATACTTCAAAGTTGTACTTAATGCCTTTC 31910286 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 ||||| || |||| |||| |||| | || ||||||| | |||||| ||||| || | Sbjct 31910285 TCTTCCTGGACATCAGAAGGAACTCCTGAATATTCTGGGAGAAGTTTATATTTTTCCAAG 31910226 Query 4075 TCAAATTCTGG--AAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACA 4132 |||| |||||| |||||| ||||||| |||||| |||| ||||||||| |||||||| | Sbjct 31910225 TCAATTTCTGGGAAAAAAATGTGTCACTTTCAAATTCTTTCATGATCCTTGTCACAAAAA 31910166 Query 4133 GTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCC 4192 || |||||| || ||| | |||| ||||| ||||| || ||||| ||||| | || || Sbjct 31910165 GTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTATAAACTGAACTGCCTCCCACTAGCC 31910106 Query 4193 AGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTA 4252 | |||||||| ||||||||| ||||||||||| || ||||||||||| |||||||| | Sbjct 31910105 AAACCATGTCCACTTTATTTTTTAATTCTGGCTTCTCAGTAAGTTTTAAGGCATCATCCA 31910046 Query 4253 AACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAA 4312 ||| || || | ||||||||||| |||||| | ||||| ||||| | |||||||| Sbjct 31910045 GACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTG 31909986 Query 4313 CATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTAC 4372 |||||||||| | |||||||| | |||||||| ||||| || ||||| ||||| ||| Sbjct 31909985 TATTAATTCTGTCCTTTAAAGGTCAATTCTTCTCTGGAATGGA-AACCAGGTCTTCCTAC 31909927 Query 4373 CCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT 4432 ||||| |||| ||||||||||| || ||| ||||| || || ||||||||||||||| Sbjct 31909926 CCATAGTCACCAAATTCTGTTTGCCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAAC 31909867 Query 4433 GTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCAT 4490 ||| | |||||| | ||| ||||| |||| || ||| || ||||| | |||||| Sbjct 31909866 ATTTGTAGTCATTCCTGAGTGGAGGCCAGGGCAGGT--CCTCGTTCTTGCCGAAGCCCAT 31909809 Query 4491 GTTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 ||| || | |||||||| ||||||||||| | ||||||| Sbjct 31909808 GTTCTGGGGCACAGCAACGATGCAGTTTAGCGGACGAACCAT 31909767 >seq7 Length=121844099 Score = 138 bits (152), Expect = 8e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 || ||||| || || || |||||||| || ||||| | || ||||| |||| || || Sbjct 46016474 ACGATGGGGGTGACACAGGTGCAGCCCACTGTCACCATCACTTTCTCCAGCCGGAAGGAG 46016415 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 || |||||| | || || | | |||| || || |||||||| ||||| ||||| ||| Sbjct 46016414 TTGGGGCAGTGGCGAGGCTCCCTTCGCAGGACCAGGATCTCTTGCTGGATGGGGACAGAG 46016355 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||||||| | ||| | ||||| |||||||| | ||| || ||| || ||||| || Sbjct 46016354 TTCATGTGATGATCTTCCTTCCCTTCAGCATTGATACAGCCCGAGTGGCTGCACTTGGCC 46016295 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||| ||||| || || || | || || ||||| Sbjct 46016294 TCCCAGATCACGGAGGGGTACCTCTCGGGGTCCTCGTTGCG 46016254 >seq2 Length=151935994 Score = 129 bits (142), Expect = 4e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| || ||||| ||||| | |||||| |||||||| ||||||||| |||||||||| Sbjct 89245538 TTATAAACTGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTTTTAATTCTGGC 89245597 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || ||||||||||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 89245598 TGCTCAGTAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGA 89245657 Query 4285 AGCTCC 4290 | ||| Sbjct 89245658 GGTTCC 89245663 Score = 118 bits (130), Expect = 8e-22 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 89251884 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGG 89251943 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 ||| |||||||| ||||| ||||||||||||| ||||||||||| Sbjct 89251944 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTT 89251988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||| |||||||||||||||||||||||||| | |||| Sbjct 89231824 AAAACACTTTCACATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 89231883 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAA 4055 ||||| || |||| |||| |||| | || | | ||||| || Sbjct 89231884 TCTTCCTGGACATCAGAAGGAACTCCTGAACA-TCTATAAA 89231923 >seq6 Length=170843587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| ||||| ||||||||||||||||| ||||| ||||| || | ||| |||| Sbjct 105655149 CTTTGTATTCAGCTCCAAAATGCCTCCACTGAAAGCCATAAACAGGGCCTAAATCCCCTT 105655208 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | || || || | || || || || || ||||| |||||||| | Sbjct 105655209 CTTCTCTGGAGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGA 105655268 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 105655269 TTTTCACTCC 105655278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248501114863