Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 325 5e-84 seq9 131 2e-25 seq3 114 2e-20 seq4 111 2e-19 >seq15 Length=140412725 Score = 325 bits (360), Expect = 5e-84 Identities = 431/599 (72%), Gaps = 18/599 (3%) Strand=Plus/Minus Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 |||| ||||||| || || || |||||||||| |||||| ||||| ||||| Sbjct 19879425 GTTTGAACATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT-------- 19879374 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 |||| || || ||||| || || || || || ||||| ||| |||| ||||| | Sbjct 19879373 ------ACGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAG 19879320 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---AC 24297 | |||||||||||||||||||| || || ||||||| || | | ||||||| | Sbjct 19879319 AACCAGAAAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAG 19879260 Query 24298 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 | | |||| ||||| | ||||| || |||| ||| |||||||||||||||| Sbjct 19879259 CCTCTTTGTCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTG 19879200 Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 |||| || ||||| |||||| | | |||| || |||||| | || |||||||| | Sbjct 19879199 TCTCGATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGA 19879140 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 || ||||||||||| ||||| |||||||| ||||| ||||| || || |||||||| | Sbjct 19879139 GGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAC 19879080 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 24537 ||| || |||||||| | |||| | ||| | || | || ||||||| ||| || | Sbjct 19879079 GAGCTTCTGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGC 19879020 Query 24538 CGTCACTGGCTGCAAAAAACGCCAATA-CATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 | ||||| |||||||| || ||||| | |||| ||||||||| | || | || | Sbjct 19879019 CATCACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTC 19878960 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 | | | ||| | | || | || || | |||| || || |||||||||| || Sbjct 19878959 ATGGTTTCCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAA 19878900 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||||||||| |||||||| | |||||||||||| |||| || ||||| || ||||| Sbjct 19878899 GCCTCTGCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq9 Length=139512083 Score = 131 bits (144), Expect = 2e-25 Identities = 105/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| | Sbjct 6031377 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATG 6031436 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||||||| ||||| || || ||||| ||||| ||||| | | ||| Sbjct 6031437 GACTCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAG 6031496 Query 53270 CTATTTC 53276 || |||| Sbjct 6031497 CTGTTTC 6031503 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 6041734 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACG 6041793 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || ||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 6041794 CTGCTCTTCCTTCCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 6041853 Query 54145 CGGTTCCA 54152 || |||| Sbjct 6041854 AGGCTCCA 6041861 >seq3 Length=132848913 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | |||||||||||| || || || ||||| || || || || | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| |||||||| ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 24277 C 24277 | Sbjct 126361097 C 126361097 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || || || | || ||||||||||| ||||| |||||||| ||||| Sbjct 126363343 ATCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGC 126363402 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | ||| ||||||||||| |||||| Sbjct 126363403 AATTTGGAAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTCT 126363448 >seq4 Length=130910915 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||||||||||||||| ||||| || || | || | Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||| Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 24277 C 24277 | Sbjct 34847539 C 34847539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717050608240