Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq13 271 9e-68 seq1 109 7e-19 >seq13 Length=208334590 Score = 271 bits (300), Expect = 9e-68 Identities = 263/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | |||| | |||| |||||||||||||| Sbjct 31916470 AGCAGGGCTTCGATGTCAGGCTCGATATCGATGGTCAGAAAGCGACGGCTGTACCTGCGC 31916529 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||| | ||||||| |||||||||||||||||| || | ||| ||||| Sbjct 31916530 AGGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCATGCGATGTCATTGCGA 31916589 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| || | || ||||||| ||| ||| | | ||||| || Sbjct 31916590 CACACTGGAGACCAGGTGATAAACTTGGGGTCGGTCATGAGGGCAGTGGCATCGTCACTG 31916649 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||| ||||| || ||||||||||||||||| || || |||| || || ||| Sbjct 31916650 GGTGTGGGCAGAGCCTCGCGGAGGAAGGCGAAGAGCGGGTGAGCATTTGCGCCATTCACC 31916709 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || ||||||||||||||||| ||||| |||||||| ||| || || ||||||| ||| Sbjct 31916710 TCACACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGGACGTACTTG 31916769 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| |||||| ||| |||||||| Sbjct 31916770 AGGCAATTCAGGATCTCCTCATTCTTGGCATTTTCCTG 31916807 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 31917074 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 31917133 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||||||||| |||||||| ||||| ||||| ||||| | |||||||| ||||||| Sbjct 31917134 GCCGCTGCAGCTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGACGCTA 31917193 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||||| | |||| | ||| | || || ||||| | Sbjct 31917194 CGTTCTCAATGAGCAGCACCTTGCCCCGTAGGGAGCCCAGGCTTATGGGCTCCCCTCCAG 31917253 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||| ||||| || Sbjct 31917254 CCAGCGGGCGCGCAGAGAAGGCATACACCGA 31917284 >seq1 Length=274330532 Score = 109 bits (120), Expect = 7e-19 Identities = 201/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| || ||||||||| || ||| Sbjct 73189177 GCAGCTACGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCACGCCTGC 73189119 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||| ||| | ||| | |||||| Sbjct 73189118 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACTTGCGGAAGCAGTATAACTGCA 73189059 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 73189058 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCTCGCATCAAGCTCATCCGCCACTAC 73189000 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| ||||| ||| ||||| ||||| |||| ||||| ||| Sbjct 73188999 GTGCAGCTGCTCTACCCGCGGGCCAAGAACGACCGCGTCTGGACGCTGGAGTTCGTGGGC 73188940 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGG-ACACAGGCGC 50693 ||||||||||||||||||||||| | ||||| ||| |||||| Sbjct 73188939 AAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAACAGAGGCGC 73188895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608792135094520