Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 212 6e-50 seq14 143 3e-29 seq12 131 2e-25 seq3 93.3 4e-14 >seq15 Length=140412725 Score = 212 bits (234), Expect = 6e-50 Identities = 532/802 (66%), Gaps = 21/802 (3%) Strand=Plus/Plus Query 116577 AGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACA 116636 |||| | ||| | || ||||| ||| | || || || || || || |||||| |||| Sbjct 19878812 AGCCACCACTGAGAGAAAACCCTCGCTGCTTTGTCATCTTTCCTATCAAATACCATGACA 19878871 Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGT 116696 | |||| ||||| || ||||| ||||| || || ||||| | |||||||||| ||| | Sbjct 19878872 TCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGGCCTCT 19878931 Query 116697 CCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA-C 116755 |||||| || ||||||| | |||| || ||| | |||| || || | Sbjct 19878932 CCAAGGGCATTCAACACTGGGAAACCATGAAGCCTAAGGAGAGATATTTTATTTCACATC 19878991 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTT 116814 | |||| || || || || || || |||||||| | || || |||| ||| | ||| Sbjct 19878992 ATCTTGGCTTTCTTTGCAGCAAGTGATGGCATCGTGGATGAAAACTTGGTGGAGTGGTTT 19879051 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 || || || | ||| | | || || || || ||||| ||||| || || |||||||| Sbjct 19879052 AGC-CAAGAAATTCAGATTACAGAAGCTCGTTGTTTCTATGGCTTCCAAATTGCCATGGA 19879110 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 ||| | || || ||||||||| |||||| || || ||| | ||| | || Sbjct 19879111 AAACATACATTCTGAAATGTATAGCCTCCTCATTGATACTTACATCAAAGATTCCAAAGA 19879170 Query 116935 GAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 |||| || | || || ||||||||||| ||||| || || || || |||| || | Sbjct 19879171 -AAGCGAATTTCTCTTCAATGCCATCGAGACAATGCCTTGTGTAAAGAAGGAGGCAGACT 19879229 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||| ||| |||||| | | || |||||| | || || || | | |||| | Sbjct 19879230 GGGCCTTGCACTGGATGGGGGACAAAGAGGCTCCACGTGGAGAACGTGTCATCACCTTTG 19879289 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | ||||| || || | |||||||| || ||| || ||| ||| ||||||||||||| Sbjct 19879290 CTGCCGTGGAAGGAATTTTCTTTTCTGGTTCTTTTGCATCCACATTCTGGCTCAAGAAAC 19879349 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 | || || ||||| |||||||| | || ||| || |||||| | | Sbjct 19879350 GAGGACTGATGCCTGGCCTGACGT--------------ATTAGCAGAGATGAGGGTTTAC 19879395 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 | |||||||||||||| || ||||||| | || | || ||| | | | | | Sbjct 19879396 ACTGCGACTTTGCCTGCCTGATGTTCAAACTCCTGCTACACAAACCTTCGGAGCAGAGAG 19879455 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 | | || || ||| | | || || || || ||| ||| ||| || | ||||| Sbjct 19879456 TGAAAGAAATAATCATCAATGCAGTTAGGATAGAACAGGAGTTCTTCATAGAGGAGCTGC 19879515 Query 117294 CGGTGCGTCT-GCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352 ||||| || |||||| | |||||| ||| || ||||| |||||||| || Sbjct 19879516 CGGTGAAGCTCACTGGGA-TGAATTGCACTTTAATGAAACAGTACATTGAGTTCGTGGCA 19879574 Query 117353 GACAGGCTGCTGCTCGAGCTGG 117374 ||||| || ||| ||||||| Sbjct 19879575 GACAGACTCAGGCTGGAGCTGG 19879596 >seq14 Length=141755446 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28260469 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28260528 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||||||| | |||||| Sbjct 28260529 GACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 28260588 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 28260589 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 28260648 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| | || ||||||||||||| || Sbjct 28260649 ATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGG 28260695 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| || | || || || ||||||||| | || || || ||| Sbjct 28257960 AATGCAGATCTTTGTAAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28258019 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || |||| || ||||||||||||||| | ||||| Sbjct 28258020 TGACACCATTGAGAATGTCAAGGGGAAGATTCAAGAAAAAGAGGGCATCCCCCCAGACCA 28258079 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28258080 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28258139 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28258140 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28258187 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28258189 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258248 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 28258249 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28258307 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28258308 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28258367 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28258368 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28258415 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28258645 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258704 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 28258705 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28258763 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28258764 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28258823 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28258824 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28258871 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28259329 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28259388 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 28259389 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28259447 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28259448 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259507 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28259508 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28259555 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28259557 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28259616 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 28259617 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 28259675 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28259676 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259735 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28259736 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28259783 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28259785 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28259844 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 28259845 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28259903 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28259904 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259963 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28259964 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28260011 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28260013 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28260072 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 28260073 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 28260131 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28260132 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28260191 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28260192 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28260239 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28258417 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258476 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||||||| | |||||| Sbjct 28258477 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28258536 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 28258537 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 28258596 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28258597 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28258643 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28258873 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258932 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||||||| | |||||| Sbjct 28258933 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28258992 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 28258993 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 28259052 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28259053 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28259099 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| | Sbjct 28260241 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28260300 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||||||| | |||||| Sbjct 28260301 GACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 28260360 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 28260361 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 28260420 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28260421 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28260467 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || || ||| | Sbjct 28259101 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28259160 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 28259161 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28259219 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||||||| |||||||| Sbjct 28259220 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259279 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 28259280 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28259327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||| | ||| | Sbjct 39747587 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACCTTTGAGGTCAAGCCCAGC 39747528 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 | | | | || | |||| | ||||| | ||||| |||||||||| | |||||| Sbjct 39747527 AATACCAAGAGAATG-TCAAAGCTAAAATCCAGGACAAGGAGGGCATCCTGCCTGACCAG 39747469 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | | ||||||||||||| || | | || ||| |||||| | Sbjct 39747468 CAGTGTCTGATTTTTGTCAGCAAACAGCTGGAGGATGGCCATACACTCTCAGACTACGAT 39747409 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| || || Sbjct 39747408 ATCCAGAAAGAGTCCACCCTTCA 39747386 >seq12 Length=61602749 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 59172097 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 59172038 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || || |||||||| ||| | ||| Sbjct 59172037 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGAC 59171978 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| |||||||| || | ||||| || || ||| Sbjct 59171977 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTAC 59171918 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| ||| |||| || ||||| || |||| ||||||| || Sbjct 59171917 AACATCCAGAAAGAGTCCACCCTCCATCTGGTTCTGCGTCTGAGGGGTGG 59171868 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 59171638 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 59171579 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || ||||| ||| | |||||| Sbjct 59171578 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 59171519 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 59171518 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 59171459 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921 |||||||| ||| |||| || ||||| || | || ||||||| ||| ||| Sbjct 59171458 ATCCAGAAAGAGTCCACTCTCCATCTGGTCCTCCGTCTGAGGGGTGGCTGCT 59171407 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 59171866 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 59171807 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || ||||| ||| | |||||| Sbjct 59171806 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 59171747 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 59171746 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 59171687 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| || ||||| || |||| ||||||| || Sbjct 59171686 ATCCAGAAAGAGTCCACTCTCCATCTGGTTCTGCGTCTGAGGGGTGG 59171640 >seq3 Length=132848913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || ||||| || ||||| || ||| |||||||||| || ||| || ||||||| ||| Sbjct 126361100 GTAGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGGTCTTTTGCATCCATATTCTGG 126361041 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||||||| || || ||||| |||||||| || |||||| || || ||| || Sbjct 126361040 CTCAAGAAACGAGGACTGATGCCTGGCCTGACCTTTTCCAACGAACTTATTAGCAGAGAT 126360981 Query 117164 GAGG 117167 |||| Sbjct 126360980 GAGG 126360977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215252132880