Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 >seq1 Length=274330532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||||| ||||| || |||||||| || |||||| | || ||||| Sbjct 86191751 GCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATCATGTACTCATACTATGGG 86191810 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||||| |||||| ||||||||||| || || || | Sbjct 86191811 CTAACTGCCTTTGGGCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCA 86191868 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 86191869 TGTTGCAGCTGGT 86191881 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| |||| ||||| || || || || || ||||| ||||| || || ||| Sbjct 86190545 TGGTGGTACTTCGTATCTAAAGGTATTGAGTATTTAGACACGGTGTTTTTTATCCTGAGG 86190604 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || || ||||||||||| | ||| |||||||| | Sbjct 86190605 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 86190664 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 | ||||| || ||||| ||| | | || || |||| Sbjct 86190665 TGGTGGATCGGAATTAAGTGGGTCCCAGGGGGACAGG 86190701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923189726004520