Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq12 116 2e-21 seq14 91.5 1e-13 >seq12 Length=61602749 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| ||||| || | || |||||||| |||||||| || || Sbjct 59171868 CCACCCCTCAGACGCAGAACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 59171927 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 59171928 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 59171987 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | || | || | | || || Sbjct 59171988 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 59172047 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||| ||||||||||| Sbjct 59172048 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 59172094 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| ||||| || | ||| |||||||| |||||||| || || Sbjct 59171640 CCACCCCTCAGACGCAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 59171699 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 59171700 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 59171759 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | || | || | | || || Sbjct 59171760 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 59171819 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| | || ||||| ||||||||||| Sbjct 59171820 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171866 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || ||||| || | ||| |||||||| |||||||| || || || ||| | || Sbjct 59171427 AGGACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 59171486 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||||||| ||||||||| ||| | || ||||| || Sbjct 59171487 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 59171546 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 59171547 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 59171606 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | || ||||| ||||||||||| Sbjct 59171607 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171638 >seq14 Length=141755446 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28258628 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28258569 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28258568 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258509 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 28258508 TGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258449 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28258448 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28258416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28259084 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259025 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28259024 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258965 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 28258964 TGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258905 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28258904 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28258872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28259312 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259253 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28259252 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28259193 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 28259192 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259133 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || |||||||||||||||||| Sbjct 28259132 TTACCAGTCAAGGTCTTCACAAAGATCTGCATC 28259100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28260452 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28260393 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28260392 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 28260333 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 28260332 TGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28260273 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28260272 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28260240 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| || | || |||| |||||| || || || Sbjct 28260659 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAG 28260600 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 28260599 ATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATTC 28260540 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| || || || | || ||||| Sbjct 28260539 TCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACG 28260480 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 28260479 AAGATCTGCATC 28260468 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28258400 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28258341 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28258340 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258281 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 28258280 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258221 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28258220 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28258188 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28258856 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28258797 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28258796 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258737 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 28258736 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258677 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28258676 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28258644 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28259540 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259481 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28259480 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28259421 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 28259420 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259361 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28259360 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28259328 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28259768 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259709 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28259708 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 28259649 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 28259648 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259589 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28259588 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28259556 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28259996 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259937 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28259936 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28259877 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 28259876 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259817 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28259816 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28259784 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 28260224 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28260165 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| ||| | || |||||||| Sbjct 28260164 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 28260105 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 28260104 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28260045 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || ||||| |||||||||||| Sbjct 28260044 TTACCAGTCAAGGTCTTCACGAAGATCTGCATC 28260012 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| || | |||||| || || | || | || Sbjct 39747377 AGCACCAAGTGAAGGGTGGACTCTTTCTGGATATCGTAGTCTGAGAGTGTATGGCCATCC 39747436 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||| |||| | ||||| || | ||||||||| | | || | || ||||||||| Sbjct 39747437 TCCAGCTGTTTGCTGACAAAAATCAGACACTGCTGGTCAGGCAGG-ATGCCCTCCTTGTC 39747495 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || || | | || | | | | ||| || | ||||||| Sbjct 39747496 CTGGAT-TTTAGCTTTGACATTCTCT-TGGTATTGCTGGGCTTGACCTCAAAGGTGATGG 39747553 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | ||||| || || || |||||||||||||||||| || Sbjct 39747554 TCTTGCCTGTTAGGGTCTTCACAAAGATCTGCATCTCT 39747591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069586349280