Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq15 244 1e-59 seq4 102 8e-17 seq3 95.1 1e-14 >seq15 Length=140412725 Score = 244 bits (270), Expect = 1e-59 Identities = 591/890 (66%), Gaps = 31/890 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| | ||||| || | |||||||| ||| |||| || || || ||| Sbjct 19879717 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCT 19879658 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 || | ||||||||| |||||||| ||||| ||||||| | | | || | | Sbjct 19879657 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAG 19879598 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| |||| | | ||| || ||||| || || || ||||||||||||||| || Sbjct 19879597 CCCAGCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAA 19879538 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || | | || || || | | ||| | || || | | |||||| |||| Sbjct 19879537 TTCATCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACT 19879478 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGTTTA 16225 || | |||||||| ||| | ||| || | || ||| || || | | |||| Sbjct 19879477 GCATTGATGATTATTTCTTTCACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTG 19879421 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||| | || ||||| || || || || || || || || || || Sbjct 19879420 AACATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT------------- 19879374 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 | || || || ||||| ||||||||||| || | ||| ||| | | ||||| |||||| Sbjct 19879373 -ACGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCA 19879315 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT----CT 16401 |||||||| || ||||| || || ||||| | | | || || || |||| || Sbjct 19879314 GAAAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCC--ACGTGGAGCCT 19879257 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 ||| | | | ||||| | ||||| | ||| | | || ||||| ||| | Sbjct 19879256 CTTTGTCCC--CCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGT 19879199 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 ||| || ||||| || | | | | |||||||| |||| || |||||||| || || Sbjct 19879198 CTCGATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAG 19879139 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 | ||||||||||| ||||| || || ||||| || || || || ||||| || || | Sbjct 19879138 GAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACG 19879079 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 |||||| | || || | ||| | ||||| || | |||||||| | || || || Sbjct 19879078 AGCTTCTGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCC 19879019 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATG-TGTTTAATAAAAtttttttCGTTA-TCTGAA 16699 ||| || |||||||| || || | ||| ||| |||||||| | | || ||| || | Sbjct 19879018 ATCACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCA 19878959 Query 16700 AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAA 16759 | ||| ||||| || | || || | | ||||| || | |||||||| ||| Sbjct 19878958 TGGTTT-CCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAA 19878900 Query 16760 GCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 || | ||||| |||||||| | ||| ||||| | ||| |||||||| Sbjct 19878899 GCCTCTGCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAA 19878850 >seq4 Length=130910915 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | || ||| |||| | Sbjct 34856280 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATCACTGCAAAAC 34856221 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 34856220 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 34856161 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 34856160 CCATAAAATCAAAGGGATTTTCTG 34856137 >seq3 Length=132848913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||||| ||||| || || || ||||| ||||||||||| || Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| || Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCT 126361098 Query 16379 AC 16380 || Sbjct 126361099 AC 126361100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508456001800