Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1 1918 0.0 seq7 98.7 7e-16 >seq1 Length=274330532 Score = 1918 bits (2126), Expect = 0.0 Identities = 1403/1628 (86%), Gaps = 25/1628 (2%) Strand=Plus/Minus Query 107144 AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTG 107203 ||||||| ||||||||||||||| |||||| |||| | |||||| ||| |||||||| || Sbjct 112427722 AGGCAGGCCTTGACTGAGGATATATGTCTAGAGAAAAAATCTATTTTTGCCATCACTTTG 112427663 Query 107204 GAGTTGAACTTGATGTTCT-------------GGATTAGTTTGTAATTAAAGGCATTTTG 107250 | | |||| ||||||||| || ||||||||||||| ||||||||||| Sbjct 112427662 GGGCTGAATTTGATGTTCCTTGAGCACATTCAGGGTTAGTTTGTAATTGAAGGCATTTTG 112427603 Query 107251 TTCTGTCCAAGGATCTCCTCCTCCACCT---TGCCTGTGCCCAAACTCTCCTGATCTCCC 107307 |||||||||||||| || |||||| ||| | |||||||||||||||| | |||||| Sbjct 112427602 TTCTGTCCAAGGATTTCATCCTCCTCCTCTTTTCCTGTGCCCAAACTCTACCAGTCTCCC 112427543 Query 107308 ATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCC 107367 || ||||||||||| | ||||||||||||| || |||||| | ||| |||||||||||| Sbjct 112427542 ATTCCATGAAGATGCTTTGGTGGAAGAAGAAACTCTGCCGGAGCCATTATCTGTGGGCCC 112427483 Query 107368 TGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTG 107427 |||| |||||||||||||||||| ||||| |||||||| |||| ||||| || ||||||| Sbjct 112427482 TGGGGTGCTATATGCTGCTGGCCATTGTTGCTCTGAGATTTTCTCTCAGATTGAAATGTG 112427423 Query 107428 ATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGT 107487 | || ||||| |||||||||||||||||||||| | || ||||||||||||||||| | Sbjct 112427422 ACATATATTCCCTGGATCTGGAGTCCAGGGACTTTCGAAGCCAGCACTGTAGGGACATTT 112427363 Query 107488 TGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAG 107547 |||| || |||||||||||||||||||||||||||||| ||||||| |||||| || | Sbjct 112427362 TGTATAAGTCCCTGAAGCTGCCAGCAAAGAGATCCATCAATTGTTCTGCGATCACTCGCG 112427303 Query 107548 GGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGT 107607 ||||||||||||||||| || || |||| ||||| |||||||| ||||| |||||| Sbjct 112427302 GGGACCAGGAAGCAGTGATCACAGCTGTCCTGGACAATCTGGAAGTCAAGAAGAAGCGGA 112427243 Query 107608 CGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCC 107667 |||| |||| | ||| ||||||| ||||| ||||||||||||||| || |||||| Sbjct 112427242 AGCCTTTCACAGACACTGATTACCTGAACATGACCAGAGACTGTGAGAAGTTTAAGGCCA 112427183 Query 107668 AAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACT 107727 | |||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||| Sbjct 112427182 ACAGGAAGTTCATACAGTTCCCGCTGAGCAAAGAAGAGCTGGACTTCCCCATCGCATACT 112427123 Query 107728 CGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCC 107787 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 112427122 CTATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCTGTGTATGCCC 112427063 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGG 107847 |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| | Sbjct 112427062 CTCAGAACATATACTGCATCCACGTGGATGAGAAGTCCCCAGAATCTTTCAAAGAGGCAG 112427003 Query 107848 TCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGG 107907 |||||||||| |||||||||||||| ||||||||||||| |||||||||||| | ||||| Sbjct 112427002 TCAAGGCCATCATTTCCTGCTTCCCAAATGTCTTCATGGTCAGTAAGTTGGTTCGGGTGG 112426943 Query 107908 TTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGA 107967 |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 112426942 TTTACGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAAGACTTGCTCCAGA 112426883 Query 107968 GCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCA 108027 |||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| Sbjct 112426882 GCTCAGTGCCCTGGAAATATTTACTGAATACATGCGGGACAGACTTTCCCATAAAGACCA 112426823 Query 108028 ATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG 108087 |||| ||||||||||||||||| ||||||||||| || |||||||||||||| || ||| Sbjct 112426822 ATGCGGAGATGGTCCTGGCCCTAAAGATGTTGAATGGCAAGAACAGTATGGAATCAGAGA 112426763 Query 108088 TACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT 108147 ||||| |||||| |||||| ||||||||| || | ||| ||||||||||||||| ||| Sbjct 112426762 TACCTACTGAGTACAAAAAGTCTCGCTGGAAGTATCACTACGAGGTGACAGACACATTGT 112426703 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 112426702 ACCTGACCAACAAGATGAAGGACCCTCCCCCTGATAATTTGCCCATGTTCACAGGGAATG 112426643 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAA 108267 ||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 112426642 CCTATATTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCCCAAATCCCAAC 112426583 Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327 || || | ||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 112426582 GATTGATCGAATGGGCCAAAGACACCTATAGCCCCGATGAACATCTCTGGGCCACCCTTC 112426523 Query 108328 AGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACA 108387 ||||||| || |||||||| ||||||||||| ||||||||||| ||||||||| |||| Sbjct 112426522 AGCGTGCCCCCTGGATGCCCGGCTCTGTTCCCTACCACCCCAAGTTTCACATCTCGGACA 112426463 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGG 108447 |||||||||| |||||||| |||||||||||| ||| |||||| | ||||||||||||| Sbjct 112426462 TGACTGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACGTCAGCATGGGGG 112426403 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 ||||||||| || |||||||||||||| | | | || |||||||||| ||||| |||| Sbjct 112426402 CGCCTTATGAGCCTTGCTCTGGAATCCACCAGCGCGCTGTCTGCATTTATGGGGCTGGGG 112426343 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGG 108567 || || |||||||||| |||||||||||||||||||| |||||||||||||| | ||||| Sbjct 112426342 ACTTGCACTGGATTCTTCAGAACCATCACCTCTTGGCGAACAAGTTTGACCCAAAGGTGG 112426283 Query 108568 ATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTG 108627 ||||||| || || ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 112426282 ATGATAATGTTCTTCAGTGCTTAGAAGAGTATTTACGTTATAAGGCCATCTATGGGACTG 112426223 Query 108628 AACTTTGAGCTG------CACTGTGGGCCAGGGAC-TGTGCCAACATGCCCAGGGCGTAC 108680 |||| |||| | | ||| ||| |||| || || ||||||| ||| || | Sbjct 112426222 AACTCTGAGAGGATGGCTCCCTGAGGGGCAGGAACATGCAAAAACATGCTCAGAATGTGC 112426163 Query 108681 TGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGA 108740 ||| || |||| ||||||| | | |||||| |||||||||| ||||||||||||| ||| Sbjct 112426162 TGGGACAGTGT-GGGTGGGAGGCCAGGGCTCTGGAATCCAT-GCATCCCCCAGGGCCAGG 112426105 Query 108741 GGGCTGCT 108748 | |||||| Sbjct 112426104 GAGCTGCT 112426097 Score = 122 bits (134), Expect = 6e-23 Identities = 570/892 (64%), Gaps = 41/892 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | || Sbjct 229465937 CCGCTTAGTAAAGAAGAGGCAGAATTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 229465996 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| | || ||| | ||| | ||| |||||||| | || || | Sbjct 229465997 ATTGAAATGCTTGACAGACTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 229466056 Query 107808 CACGTGGATGTGAAGTCCCCAGAGA----CTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||||| || || |||| ||||| | || || | | ||| || Sbjct 229466057 CACGTGGACAAAAAATC---AGAGGAATCCTTTCTG-GCCGCAGTGATTGGTATTGCATC 229466112 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 ||||||| |||||||| |||||||| | ||| ||||| ||||| || ||| Sbjct 229466113 CTGCTTCAGTAATGTCTTTGTGGCCAGTCAACTGGAGAGTGTGGTGTATGCATCATGGAG 229466172 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGG 107981 | | || || |||||||| ||||| ||| | ||| | ||||| | | ||| ||| Sbjct 229466173 CCGGGTTCAGGCTGACCTCAACTGCATGCAGGACCTCTACCAGA--TGAATGCAGACTGG 229466230 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| ||||| | || ||||| || || ||||| || || ||| Sbjct 229466231 AAGTACTTGATAAATCTCTGCGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTC 229466290 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAG 108098 | |||||| || | |||||| || || | || |||| | || || | Sbjct 229466291 AGGATGCTCAAGCTGCTAAAGGGTGGGAGCAACCTTGAAACTGAAAGAATGCCATCCAA- 229466349 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATG-AG--GTGACAGACACACTGTACCCTACC 108155 ||||||| | || |||||| | | || || |||| | | ||| || Sbjct 229466350 --CAAAAAAGAACGGTGGAAAAAACATTACACAGTTGTGAATGGAAAGCTG------ACA 229466401 Query 108156 AGCAAGATGAAGGAC------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCC 108209 | || | || ||| | ||| ||| | | || |||| |||| | |||| Sbjct 229466402 AACATGGGGACCGACAAAACACATCCTCCTCTTGAGACCCCTTTGTTTTCAGGCAGTGCC 229466461 Query 108210 TATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA 108269 ||||| |||| | | | | ||| | |||| | || || ||| ||| | Sbjct 229466462 TATTTCGTGGTCAGTAGGAGTTATGTGGAGTATGTGCTGGAGAATGAAAAAATCCAGAAG 229466521 Query 108270 CTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAG 108329 | | || |||| |||||||| || ||||| || || | ||||||||||| |||| Sbjct 229466522 TTTATGGAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAA 229466581 Query 108330 CGTGCTCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGA 108385 | | ||| | | | || ||||| | |||| |||||| ||||| |||| || || Sbjct 229466582 AG-GATCCCAGAAGTCCCAGGCTCACTGTCCTTAAGCCAC---AAGTACGACATGTCTGA 229466637 Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 |||| | | || || ||| | ||||||||||||||| || || || || || ||| Sbjct 229466638 CATGCATTCGATTGCAAGGTTTGTCAAGTGGCAGTACTTTGAAGGCGACGTTTCCAAGGG 229466697 Query 108446 GGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGG 108505 || || || |||| ||| || ||||| | | | | ||| ||| ||| ||||| Sbjct 229466698 CGCCCCCTACCCACCGTGCAGCGGCATCCACGTGCGCTCTGTGTGCGTTTTCGGAGCCGG 229466757 Query 108506 GGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| || ||||| | || | | |||||| | || || |||||||| ||| Sbjct 229466758 TGACTTGAACTGGCTGCTGCGCACACATCACTTGTTTGCCAACAAGTTCGAC 229466809 >seq7 Length=121844099 Score = 98.7 bits (108), Expect = 7e-16 Identities = 228/336 (68%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 107696 TAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 ||||||||| ||| ||||||||| | |||||| ||||| | ||| | || | || | Sbjct 7361063 TAAAGAAGAAGCT-GACTTCCCCTTGGCCTACATCATGGTCATTCATCACAATTTCGATA 7361121 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||| | | |||| | |||| ||||| ||||||||| | |||||||||||||||| Sbjct 7361122 CCTTCGCAAGGCTCTTCAGAGCTGTGTACATGCCTCAGAACGTCTACTGTGTCCACGTGG 7361181 Query 107815 ATGTG-AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 ||| | ||| | ||| || |||||||| || || || | | | ||||||||| Sbjct 7361182 ATGAGAAAGCCACCACTGA-ATTCAAAGATGCAGTGGAGCACCTCCTGAGCTGCTTCCCG 7361240 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 |||| |||| |||| ||| || || ||||| || | | ||||| | || Sbjct 7361241 AATGCCTTCCTGGCTTCCAAGACGGAGCCCGTGGTCTACGGCGGGATTTCCAGGCTCCAG 7361300 Query 107934 GCTGACCTGAACTGTATGGAAGA-CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992 || ||||| ||||| || | || || || | | | || || ||||| ||| | Sbjct 7361301 GCGGACCTCAACTGCATCAAGGATCTGGCGGCCTCG-GCGGTCCCGTGGAAATACGCCAT 7361359 Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || |||||| ||||||||| | || ||||| Sbjct 7361360 CAACACCTGCGGGCAGGACTTCCCCCTGAAAACCAA 7361395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348266198105562