Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 5e-12 >seq6 Length=170843587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| | || ||||| ||| || ||||| || ||||| | || Sbjct 105645927 AGATCTCCCTCTCATGGCCCTCCCCCCATGCCATGCCCTTTGCCAGTTCTACGTGGTAAA 105645868 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| || || || | || |||||||||||||| || || Sbjct 105645867 TGGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGACATGGGACTGGGTGTGCCCTT 105645808 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| || || || || || ||||| || || ||||| ||||| | |||| Sbjct 105645807 CAACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACAG 105645758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399181017721285