Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15 226 3e-54 seq3 111 2e-19 >seq15 Length=140412725 Score = 226 bits (250), Expect = 3e-54 Identities = 587/893 (66%), Gaps = 19/893 (2%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || ||| ||||||| || || ||| Sbjct 19879717 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCT 19879658 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| |||||||| ||||| |||||| | | || || || | Sbjct 19879657 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAG 19879598 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || || || | | ||| || || | ||||||||| || || ||||||| ||| Sbjct 19879597 CCCAGCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAA 19879538 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || | || || || || | | | || || || | |||||| || Sbjct 19879537 TTCATCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACT 19879478 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197 || | | | || || | | | | | ||||| | | || |||| || Sbjct 19879477 GCATTGATGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAAC 19879418 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 || | || ||||| || || || | ||||||||||| |||||| || | Sbjct 19879417 ATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAATACGTCAGG-------- 19879366 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317 || ||||||| ||||||||| || | ||| ||| | | || || || || ||| Sbjct 19879365 ------CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAA 19879312 Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377 ||||| ||||| || || |||||||| | || | ||||||||| | || | |||| Sbjct 19879311 AAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTG 19879252 Query 14378 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | | ||||| | ||||| || | | || || | | || |||||| || || Sbjct 19879251 TCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATG 19879192 Query 14438 GCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 ||||| || | | ||| | ||||| | | | ||||| |||||||| || | |||| Sbjct 19879191 GCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTA 19879132 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 ||||||||||| |||||||||||||| || || || || ||||| ||||| | ||||||| Sbjct 19879131 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCT 19879072 Query 14558 GACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 | || | ||| | ||| | || |||| ||||||| || || |||||||| Sbjct 19879071 GTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTT 19879012 Query 14618 GCTGCAAAAAATGCCAATATG-TTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTT 14676 |||||||| || ||||| ||| | | |||||| ||| ||| | | ||| | ||| Sbjct 19879011 GCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTA-GGCTTCATGGTTT 19878953 Query 14677 CCAATCGGCTAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 || | | | ||| |||| || || | || || ||| |||||||||| ||| | Sbjct 19878952 CCCA-GTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCT 19878894 Query 14735 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 || || |||||||| ||| || || | ||| |||||||| | ||||| Sbjct 19878893 GCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq3 Length=132848913 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| |||||||||||||| ||||| || | || ||||||| ||||||||| | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || || || ||||| | Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 126361097 CTACGACCCGTTCTCC 126361112 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || |||||||| | ||||| || | ||||| || ||||||||||| || || || Sbjct 126359105 GACATCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTTGTCTTCCCC 126359164 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||| || ||||| |||||||| ||||| ||||| Sbjct 126359165 TCCAGGGAAATATTCTCCATAAAGTCAAAGGGATT 126359199 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || || || || | ||||||||||||||| |||||||||||||| || || || Sbjct 126363350 ATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 126363409 Query 14534 AAACCATAAAAACATCTAGCTTC 14556 || ||||| ||||| | |||||| Sbjct 126363410 AAGCCATAGAAACAACGAGCTTC 126363432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482341904026840