Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 120 3e-22 seq12 107 2e-18 seq14 82.4 7e-11 seq7 82.4 7e-11 >seq9 Length=139512083 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 6039512 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTT 6039571 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| |||||||||||||| || || Sbjct 6039572 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTT 6039631 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||||||||||||||| || Sbjct 6039632 CCTGTCTCTGTCTGCGACTCGATGATGGC 6039660 >seq12 Length=61602749 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || |||||| | || || || || Sbjct 59171866 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 59171807 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| ||||||||| | || ||||||||| Sbjct 59171806 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 59171747 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | ||||| ||| Sbjct 59171746 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 59171687 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| |||||||| || | |||||||| |||| Sbjct 59171686 ATCCAGAAAGAGTCCACTCTCCATCTGGTTCTGCGTCTGAGGGGTGGTA 59171638 Score = 100 bits (110), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 59172099 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 59172041 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||| | || || | || ||| ||||| ||| | || ||| Sbjct 59172040 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCC 59171981 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| |||| || ||| | ||| Sbjct 59171980 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGAT 59171921 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| || || || |||||||| || | |||||||| |||| Sbjct 59171920 TACAACATCCAGAAAGAGTCCACCCTCCATCTGGTTCTGCGTCTGAGGGGTGGTA 59171866 >seq14 Length=141755446 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || | Sbjct 28258189 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258248 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||||| | || || |||||| Sbjct 28258249 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28258308 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || || || ||| ||||||| Sbjct 28258309 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGA 28258343 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || | Sbjct 28258417 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258476 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||||| | || || |||||| Sbjct 28258477 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28258536 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || || || ||| ||||||| Sbjct 28258537 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGA 28258571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || | Sbjct 28258645 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258704 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||||| | || || |||||| Sbjct 28258705 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28258764 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || || || ||| ||||||| Sbjct 28258765 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGA 28258799 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || | Sbjct 28258873 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28258932 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||||| | || || |||||| Sbjct 28258933 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28258992 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || || || ||| ||||||| Sbjct 28258993 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGA 28259027 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || | Sbjct 28259329 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28259388 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||||| | || || |||||| Sbjct 28259389 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28259448 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || || || ||| ||||||| Sbjct 28259449 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGA 28259483 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || | Sbjct 28259785 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGC 28259844 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||||| | || || |||||| Sbjct 28259845 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 28259904 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || || || ||| ||||||| Sbjct 28259905 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGA 28259939 >seq7 Length=121844099 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/221 (68%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||||||||| || ||||| |||| |||||||| Sbjct 52639381 AAGATGCATATATTTGTGAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTTGAACCC 52639440 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| ||| ||| | ||||| ||| Sbjct 52639441 TCAGATACATTAGAAAATGTAAAGGCTAAGATCCAGGATAAGATAGGAATTCCGCCTGAC 52639500 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || | || |||||||| || ||||||| ||| | || || Sbjct 52639501 CAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACCTACTTT----GACTAC 52639556 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| |||||| | || ||||||||||| ||| | ||||| Sbjct 52639557 GACACTCAAAAGGTGTCCACTCTTCATCTTGTATTGAGACT 52639597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762984314960