Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15 342 6e-89 seq9 125 9e-24 seq5 116 5e-21 seq4 105 8e-18 seq3 105 8e-18 >seq15 Length=140412725 Score = 342 bits (378), Expect = 6e-89 Identities = 636/934 (68%), Gaps = 21/934 (2%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 33292 ||| |||||| |||| || | |||| ||| ||| || ||||| |||||||| | Sbjct 19879760 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCCGACTCGACATCACTCCCATCCT 19879701 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || || || || || | || || | || || || || ||||||| ||| ||||| || Sbjct 19879700 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATTCTC 19879641 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 ||| || ||||| ||||| || || ||| || | || |||| || | | Sbjct 19879640 CATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGCCTGAG 19879581 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 ||| ||||| ||||| || || || |||||| | |||||||| || |||| || Sbjct 19879580 TCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCATCCCAGTGAGCTT 19879521 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 || || || || | | | || || ||||| || || ||||| | || || Sbjct 19879520 CACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTC 19879461 Query 33533 TCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATC 33592 | | || | | || ||| |||| | |||| ||||||| || || || || Sbjct 19879460 TTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATCAGGCAGGCAAAGTC 19879401 Query 33593 GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAG 33652 |||||| | |||||| ||||| ||||| |||| || || ||||| || Sbjct 19879400 GCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTCAGGCCAGGCATCAG 19879355 Query 33653 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTAC 33712 || || || || ||||| ||| |||| || || || || |||||||| |||||||| || Sbjct 19879354 TCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATTCCTTCCAC 19879295 Query 33713 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 33769 |||||||||| || | | |||||| | | | |||| ||||| | Sbjct 19879294 GGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTGTCCCCCATCCAGTGCAA 19879235 Query 33770 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33829 ||||| || |||| ||| |||||||||||||| || || |||||||| |||||| | | Sbjct 19879234 GGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGAAATTC 19879175 Query 33830 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33889 |||| || |||||| | |||||||| || | || ||||||||||| ||||| || Sbjct 19879174 GCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATTTCAGAATGTAT 19879115 Query 33890 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 33949 |||||| ||||| || || || || |||||||| | ||| || |||||||| | |||| Sbjct 19879114 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATCTGAATTTCTTG 19879055 Query 33950 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 | ||| | || | || ||||||| ||| || |||||||| |||||||| || ||||| Sbjct 19879054 GCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCAAAGAAAGCCAA 19878995 Query 34010 TA-CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 34068 | |||| ||||||||| | || | || | | | | ||| | | || | | Sbjct 19878994 GATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTCCCAGTGTTGAATGCCCT 19878935 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | |||| || || |||||||||| || ||||||||||| |||||||| | || Sbjct 19878934 TGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTCTTATACATCTGCC 19878875 Query 34129 AGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||||||||| |||| ||| || || || ||||| Sbjct 19878874 AGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq9 Length=139512083 Score = 125 bits (138), Expect = 9e-24 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| ||||||||||| || ||||| | Sbjct 6031377 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATG 6031436 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||||||| ||||| || || ||||| ||||| ||||| | | ||| Sbjct 6031437 GACTCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAG 6031496 Query 62508 CTATTTC 62514 || |||| Sbjct 6031497 CTGTTTC 6031503 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||||||||| |||||| ||| | || || || || || || | Sbjct 6027907 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGTATGT 6027966 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 6027967 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCCATCTTGAGGACAGTTT 6028026 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||| ||||||| |||| | || || |||| Sbjct 6028027 TCTGGGAGATTTCCCATACAGTCTTATAAAGCTGCTTCAGGTCATCAGGAA 6028077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || ||||| || || | || || || || | ||| || || || || || || | Sbjct 6035112 CATAGGTTTCATAGGGGCCATACTCCTTGGCCAGGTCACAGCTAGCTTCCAAGGCTCCAT 6035171 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||| |||||||||||||||| |||||| | || || || || || ||||| || | Sbjct 6035172 AATAGATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 6035231 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 6035232 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 6035291 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 6035292 GTTTATTTGA 6035301 >seq5 Length=104526007 Score = 116 bits (128), Expect = 5e-21 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| ||| | |||||||| || ||||||||||||| ||| Sbjct 30494857 GTTACTTTCTATGATGTATATATTGTTCTGCAAGCTTTTATACTGACTACTGCAGTATTT 30494798 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 |||| | ||||| || |||||||||||| |||||||||||||| ||| ||| Sbjct 30494797 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTG 30494746 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||| ||||||||||||| ||||| ||||| || |||||||||||| Sbjct 30511438 TGCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 30511379 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 30511378 ATCCGAATGG 30511369 >seq4 Length=130910915 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || |||||||||||||| ||||| || || | || | Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||||| Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 33724 C 33724 | Sbjct 34847539 C 34847539 >seq3 Length=132848913 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | |||||| ||||| || || || ||||| || || || || | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| || || || || ||||||||||| ||||| || || ||||||| Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 33724 C 33724 | Sbjct 126361097 C 126361097 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| ||||| | || ||||||||||| ||||| |||||||| ||||| Sbjct 126363343 ATCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGC 126363402 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | ||| ||||||||||| |||||| Sbjct 126363403 AATTTGGAAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTCT 126363448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812774022640