Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15 233 2e-56 seq4 111 1e-19 seq3 107 2e-18 seq9 104 2e-17 >seq15 Length=140412725 Score = 233 bits (258), Expect = 2e-56 Identities = 593/892 (66%), Gaps = 30/892 (3%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| || | |||| || | || | || || ||||| ||||| | Sbjct 19879712 CACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTCGTCTTCCCTTCCA 19879654 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||||| ||| ||||| | ||| |||| || || | || | Sbjct 19879653 GTGAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAGCCCA 19879594 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | ||| ||||| ||||| || || ||||| ||||||| ||||||| Sbjct 19879593 GCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCA 19879534 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || | || | |||||| | | || | || ||||||| |||||| |||| |||| Sbjct 19879533 TCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCAT 19879474 Query 11568 CAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 |||||||| | || || | || || ||| |||| | |||| ||||| Sbjct 19879473 TGATGATTATTT-CTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATC 19879415 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| || || |||||||| || ||||| || || | || Sbjct 19879414 AGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTC 19879369 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | || ||||||| ||||||||| || | ||| ||| | | ||||| |||||||||||| Sbjct 19879368 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAG 19879309 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTA 11803 || ||||| ||||| || ||||| | | || | ||||||| | ||| ||| Sbjct 19879308 AAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTGTCC 19879249 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | |||||| || || | ||| ||||| || |||||| || || || Sbjct 19879248 CCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCA 19879189 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||| | | || ||||| || | | |||| Sbjct 19879188 TTGAAGAGAAATTC--GCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTAT 19879131 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||||| ||||| || |||||||| || ||||| || ||||||||||| || || |||| Sbjct 19879130 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTG 19879071 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || ||| | ||| | || || |||| || || |||||||| | Sbjct 19879070 TAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTG 19879011 Query 12042 ATGCAAAAAATGCTAGTAT-ATGTTTTATAAAGTATTTTTCGTCTTTAG-TTAAT-TTAT 12098 |||||| || || | || |||| ||||| ||| | || ||| | || || | | Sbjct 19879010 CTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTC--CTTAGGCTTCATGGTTT 19878953 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 |||| | | | | || || | | || || ||| | |||||||| ||| ||| Sbjct 19878952 CCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTG 19878893 Query 12159 ATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | |||||||| | |||||| ||||| || || ||||| || || || || Sbjct 19878892 CCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq4 Length=130910915 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| ||| Sbjct 34847657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 34847598 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| || Sbjct 34847597 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 34847538 Query 11774 ACTACTCTTTCTCC 11787 || || ||||| || Sbjct 34847537 ACCACCCTTTCCCC 34847524 >seq3 Length=132848913 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||| || ||||| || | || ||||||| ||||||||| || Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| || ||||||||||| || || ||||| || ||||| ||| Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCT 126361098 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 126361099 ACGACCCGTTCTCC 126361112 >seq9 Length=139512083 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || ||||| || || || ||||||||| Sbjct 6031377 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATG 6031436 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | || || |||| || || ||||||||||| ||||| || || | | Sbjct 6031437 GACTCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAG 6031496 Query 37258 CTATTTC 37264 || |||| Sbjct 6031497 CTGTTTC 6031503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521209928720