Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15 325 5e-84 seq5 167 3e-36 seq9 131 2e-25 seq3 114 2e-20 seq4 111 2e-19 >seq15 Length=140412725 Score = 325 bits (360), Expect = 5e-84 Identities = 431/599 (72%), Gaps = 18/599 (3%) Strand=Plus/Minus Query 36144 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 36203 |||| ||||||| || || || |||||||||| |||||| ||||| ||||| Sbjct 19879425 GTTTGAACATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT-------- 19879374 Query 36204 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 36263 |||| || || ||||| || || || || || ||||| ||| |||| ||||| | Sbjct 19879373 ------ACGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAG 19879320 Query 36264 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---AC 36320 | |||||||||||||||||||| || || ||||||| || | | |||||| | Sbjct 19879319 AACCAGAAAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAG 19879260 Query 36321 CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 36380 | | |||| ||||| | ||||| || |||| ||| |||||||||||||||| Sbjct 19879259 CCTCTTTGTCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTG 19879200 Query 36381 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 36440 |||| || ||||| |||||| | | |||| || |||||| | || |||||||| | Sbjct 19879199 TCTCGATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGA 19879140 Query 36441 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 36500 || ||||||||||| ||||| |||||||| ||||| ||||| || || |||||||| | Sbjct 19879139 GGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAC 19879080 Query 36501 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 36560 ||| || |||||||| | |||| | ||| | || | || ||||||| ||| || | Sbjct 19879079 GAGCTTCTGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGC 19879020 Query 36561 CGTCACTGGCTGCAAAAAACGCCAATA-CATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 | ||||| |||||||| || ||||| | |||| ||||||||| | || || || | Sbjct 19879019 CATCACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTC 19878960 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 | | | ||| | | || | || || | |||| || || |||||||||| || Sbjct 19878959 ATGGTTTCCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAA 19878900 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||||||||||| |||||||| | |||||||||||| |||| || ||||| || ||||| Sbjct 19878899 GCCTCTGCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq5 Length=104526007 Score = 167 bits (184), Expect = 3e-36 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||| ||| || ||||||||||| ||| Sbjct 30490595 TTTTTATTAACTGCTTCCAAAACCCGCAACAGGTGCAGGAATAGGTTGATGATATCTAAG 30490654 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || ||| |||| || || ||||| Sbjct 30490655 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGGGAGTGT 30490714 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | ||| || || | |||| || ||||| |||| Sbjct 30490715 GTGTCATAGATGATGAATCCGCAGAAAAGAAGAGCTCCTACGGCAGCCAAGACCAACTCC 30490774 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||| ||||| | | ||||| Sbjct 30490775 ATTGTCTCACTGTAAAAAAATA 30490796 Score = 147 bits (162), Expect = 3e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||||||||| ||||||||||||||| |||||| | ||||| Sbjct 30494739 CCGGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 30494798 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | || ||||||||||||||||| Sbjct 30494799 AATACTGCAGTAGTCAGTATAAAAGCTTGCAGAACAATATATACATCATAGAAAGTAAC 30494857 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 30511369 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 30511428 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 | |||||||| | |||| || Sbjct 30511429 TCGAGGAGCAGGGGTAGCGG 30511448 >seq9 Length=139512083 Score = 131 bits (144), Expect = 2e-25 Identities = 105/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| | Sbjct 6031377 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATG 6031436 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||||||| ||||| || || ||||| ||||| ||||| | | ||| Sbjct 6031437 GACTCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAG 6031496 Query 65301 CTATTTC 65307 || |||| Sbjct 6031497 CTGTTTC 6031503 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||||||||| |||||| ||| | || || || || || || | Sbjct 6027907 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGTATGT 6027966 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 6027967 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCCATCTTGAGGACAGTTT 6028026 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||| ||||||| |||| | || || |||| Sbjct 6028027 TCTGGGAGATTTCCCATACAGTCTTATAAAGCTGCTTCAGGTCATCAGGAA 6028077 >seq3 Length=132848913 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | |||||||||||| || || || ||||| || || || || | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 36300 C 36300 | Sbjct 126361097 C 126361097 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || || || | || ||||||||||| ||||| |||||||| ||||| Sbjct 126363343 ATCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGC 126363402 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | ||| ||||||||||| |||||| Sbjct 126363403 AATTTGGAAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTCT 126363448 >seq4 Length=130910915 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||||||||||||||| ||||| || || | || | Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||| Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 36300 C 36300 | Sbjct 34847539 C 34847539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167756750920