Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 >seq6 Length=170843587 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 105645752 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 105645811 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || || |||||||| | |||| |||||||| |||||||||||||||||| Sbjct 105645812 GCACACCCAGTCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTA 105645871 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | | || || || ||||| ||||| Sbjct 105645872 CCACGTAGAACTGGCAAAGGGCATGGCATGGGGGGAGGGCCAT 105645914 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 20953 GGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCA 21012 |||| | ||| | ||||| |||||||| || ||||||| |||| ||| | ||||| Sbjct 62494886 GGGCATGTCCCGAAGTGTGTTCAAAGTCTAT-GGCTTCAGGCCTGTGATGTGTGGGATCA 62494828 Query 21013 GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGG 21072 || || || | || ||||||||| ||||| || | || || || |||||||| | | Sbjct 62494827 TGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAGTGCACGCCCAGACCCATGTCCCCCG 62494768 Query 21073 ACCTCTGGTACAGCTGGCAGGACAGCTCCC 21102 || ||||||||||||| |||||||||||| Sbjct 62494767 ACTCCTGGTACAGCTGGTAGGACAGCTCCC 62494738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772804112240