Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15 304 2e-77 seq3 134 2e-26 seq9 122 1e-22 seq4 107 3e-18 >seq15 Length=140412725 Score = 304 bits (336), Expect = 2e-77 Identities = 629/936 (67%), Gaps = 25/936 (3%) Strand=Plus/Minus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 49670 ||| |||||| |||| | | |||| ||| ||| || ||||| |||||||| | Sbjct 19879760 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCCGACTCGACATCACTCCCATCCT 19879701 Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 || || || || || | || || | || || || || ||||||| ||| ||||| || Sbjct 19879700 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATTCTC 19879641 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 ||| || ||||| ||||| || | ||| || | || |||| || | | Sbjct 19879640 CATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGCCTGAG 19879581 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 ||| || || || || || || || |||||| | |||||||| || | || || Sbjct 19879580 TCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCATCCCAGTGAGCTT 19879521 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 49910 || || || || | | | || || ||||| || || |||| | || || Sbjct 19879520 CACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTC 19879461 Query 49911 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 49970 | | || | | || ||| || | | |||| ||||||| || || || || Sbjct 19879460 TTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATCAGGCAGGCAAAGTC 19879401 Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030 |||||| | |||||| ||||| ||||| |||| || || ||||| || Sbjct 19879400 GCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTCAGGCCAGGCATCAG 19879355 Query 50031 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTAC 50090 || || || || ||||| ||| |||| ||||| || ||||||||||| |||||||| || Sbjct 19879354 TCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATTCCTTCCAC 19879295 Query 50091 TGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC-----TGTCATGTATCCACTTT 50145 || ||||||| | | | |||||| ||| || |||| ||||| | Sbjct 19879294 GGCAGCAAAGGTGATGACACGTTCTCCACG--TGGAGCCTCTTTGTCCCCCATCCAGTGC 19879237 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 ||||| || |||| ||| |||||||||||||| || || |||||||| |||||| | Sbjct 19879236 AAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGAAAT 19879177 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | |||| || |||||| | |||||||| || | || ||||||||||| ||||| Sbjct 19879176 TCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATTTCAGAATGT 19879117 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 |||||||| ||||| || || || || |||||||| | ||| || |||||||| | |||| Sbjct 19879116 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATCTGAATTTCT 19879057 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 | ||| | || | || ||||||| ||| || || ||||| |||||||| || ||| Sbjct 19879056 TGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCAAAGAAAGCC 19878997 Query 50386 AATA-CATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 || | |||| ||||||| | | || || || | | | | ||| | | || | Sbjct 19878996 AAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTCCCAGTGTTGAATGCC 19878937 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 || || | | || || || |||||||||| || ||||||||||| |||||||| | Sbjct 19878936 CTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTCTTATACATCTG 19878877 Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 |||||||||||| |||| ||| || || || ||||| Sbjct 19878876 CCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq3 Length=132848913 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| |||||||||||||| || || || ||||| || || || || | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| |||||||| ||||| ||||||||||||||||| ||||| || |||||||||| Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 50102 CAAC 50105 | || Sbjct 126361097 CTAC 126361100 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| ||||| | || ||||||||||| ||||| |||||||| ||||| Sbjct 126363343 ATCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGC 126363402 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | ||| ||||||||||| |||||| Sbjct 126363403 AATTTGGAAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTCT 126363448 >seq9 Length=139512083 Score = 122 bits (134), Expect = 1e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| | Sbjct 6031377 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATG 6031436 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||||||| ||||| || || || || ||||| ||||| | | ||| Sbjct 6031437 GACTCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAG 6031496 Query 79180 CTATTTC 79186 || |||| Sbjct 6031497 CTGTTTC 6031503 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||||||||| |||||| ||| | || || || || || || | Sbjct 6027907 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGTATGT 6027966 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 6027967 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCCATCTTGAGGACAGTTT 6028026 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||| ||||||| |||| | || || |||| Sbjct 6028027 TCTGGGAGATTTCCCATACAGTCTTATAAAGCTGCTTCAGGTCATCAGGAA 6028077 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 6041738 ACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACGCTGC 6041797 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 6041798 TCTTCCTTCCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 6041857 Query 80059 TCCA 80062 |||| Sbjct 6041858 TCCA 6041861 >seq4 Length=130910915 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||||||||||||||| ||||| || || | || | Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||| Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 50102 CAAC 50105 | || Sbjct 34847539 CCAC 34847536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263296265320