Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15 230 2e-55 seq3 120 3e-22 >seq15 Length=140412725 Score = 230 bits (254), Expect = 2e-55 Identities = 587/893 (66%), Gaps = 19/893 (2%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || ||| ||||||| || || ||| Sbjct 19879717 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCT 19879658 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| |||||||| ||||| |||||| | | || || || | Sbjct 19879657 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAG 19879598 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | ||| || || | |||||||| || || ||||||| ||| Sbjct 19879597 CCCAGCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAA 19879538 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || | || || || || | | | || || || | |||||| || Sbjct 19879537 TTCATCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACT 19879478 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865 || | | || || | | | ||| | ||||| | | || |||| || Sbjct 19879477 GCATTGATGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAAC 19879418 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 || | || ||||| || || || | ||||||||||| |||||| || | Sbjct 19879417 ATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAATACGTCAGG-------- 19879366 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 || ||||||| ||||||||| || | ||| ||| | | ||||| || || ||| Sbjct 19879365 ------CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAA 19879312 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||||| ||||| || || |||||||| | || | ||||||||| | || | |||| Sbjct 19879311 AAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTG 19879252 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | | ||||| | ||||| || | | || || | | || |||||| || || Sbjct 19879251 TCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATG 19879192 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 ||||| || | | |||| | ||||| | | | ||||| |||||||| || | |||| Sbjct 19879191 GCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTA 19879132 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 ||||||||||| |||||||||||||| || || || || ||||| || || | |||||| Sbjct 19879131 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCT 19879072 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | || | ||| | ||| | || |||| ||||||| || || |||||||| Sbjct 19879071 GTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTT 19879012 Query 14286 GCTGCAAAAAATGCCAATATG-TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 |||||||| || ||||| ||| | | |||||| ||| ||| | | || | ||| Sbjct 19879011 GCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTC 19878952 Query 14345 CCAATCGGATAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 ||| | | | ||| |||| || || | || || ||| |||||||||| ||| | Sbjct 19878951 CCAGT--GTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCT 19878894 Query 14403 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 || || |||||||| ||| || || | ||| |||||||| | ||||| Sbjct 19878893 GCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq3 Length=132848913 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| |||||||||||||| ||||| || | || ||||||| ||||||||| | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| ||||| |||||||| || || || || || ||||| | Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 126361097 CTACGACCCGTTCTCC 126361112 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || |||||||| | ||||| || | ||||| || ||||||||||| || || || Sbjct 126359105 GACATCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTTGTCTTCCCC 126359164 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||| || ||||| |||||||| ||||| ||||| Sbjct 126359165 TCCAGGGAAATATTCTCCATAAAGTCAAAGGGATT 126359199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724324084200