Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15 221 1e-52 seq3 111 2e-19 >seq15 Length=140412725 Score = 221 bits (244), Expect = 1e-52 Identities = 585/893 (66%), Gaps = 19/893 (2%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||| | ||||| || || ||| Sbjct 19879717 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCT 19879658 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| |||||||| || || |||||| | | || || || | Sbjct 19879657 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAG 19879598 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | ||| || || | |||||||| || || ||||||| ||| Sbjct 19879597 CCCAGCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAA 19879538 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || | || || || || | | | || || || | |||||| || Sbjct 19879537 TTCATCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACT 19879478 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | | | || || || | | | | ||||| | | || |||| || Sbjct 19879477 GCATTGATGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAAC 19879418 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || | || ||||| || || || | ||||||||||| |||||| || | Sbjct 19879417 ATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAATACGTCAGG-------- 19879366 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || ||||||| ||||||||| || | ||| ||| | | || || || || ||| Sbjct 19879365 ------CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAA 19879312 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| ||||| || || |||||||| | || | ||||||||| | || | |||| Sbjct 19879311 AAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTG 19879252 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 | ||||| | ||||| || | | || || | | || |||||| ||||| Sbjct 19879251 TCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATG 19879192 Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 |||||||| | | ||| | ||||| | | | ||||| |||||||| || | |||| Sbjct 19879191 GCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTA 19879132 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013 ||||||||||| ||||||||||| || || || || || ||||| ||||| | ||||||| Sbjct 19879131 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCT 19879072 Query 14014 GACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073 | || | || | ||| | || |||||||||||| || || |||||||| Sbjct 19879071 GTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTT 19879012 Query 14074 GCTGCAAAAAATGCCAATATG-TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14132 |||||||| || ||||| ||| | | |||||| ||| ||| | | || | ||| Sbjct 19879011 GCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTC 19878952 Query 14133 CCAATCGGCTAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 ||| | | | ||| |||| || || | || || ||| |||||||||| ||| | Sbjct 19878951 CCAGT--GTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCT 19878894 Query 14191 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || || |||||||| ||| || || | ||| |||||||| | ||||| Sbjct 19878893 GCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq3 Length=132848913 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| |||||||||||||| ||||| || | || ||||||| ||||||||| | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || || || ||||| | Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 126361097 CTACGACCCGTTCTCC 126361112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585132813320