Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq15 224 9e-54 seq4 111 1e-19 seq3 82.4 7e-11 >seq15 Length=140412725 Score = 224 bits (248), Expect = 9e-54 Identities = 570/868 (66%), Gaps = 23/868 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| || ||| | ||||| |||| ||||| || ||| | ||||| || || ||| Sbjct 19879717 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCT 19879658 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTT 12960 || | |||||||| |||||||| || || ||||||| || | || || | Sbjct 19879657 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACC----TTGCT 19879602 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | || | || || | |||||| || || ||||| |||||||||||||||||| Sbjct 19879601 GAAGCCCAGCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGT 19879542 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 || ||||| || | | || || |||| | ||| | || || | | |||||| Sbjct 19879541 GCAATTCATCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCT 19879482 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 |||||| | ||| | ||| ||| | | | | ||| | || | | || | || Sbjct 19879481 AACTGCATTGATGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTT 19879422 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||||||| || ||||| || ||||| || || |||||||| || || Sbjct 19879421 GAACATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT------------ 19879374 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 | || || || ||||| || |||||||| || | ||| ||| | | ||||| ||||| Sbjct 19879373 --ACGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACC 19879316 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 ||||| || |||||||| || || ||||| | || | | ||| ||| | | | Sbjct 19879315 AGAAAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTC 19879256 Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 ||| | | ||||| | |||||||| ||| | | || || || ||| | || Sbjct 19879255 TTTGTCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTC 19879196 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || || || || | | | | |||| || ||| || |||||||| || | | Sbjct 19879195 GATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAG 19879136 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 |||||||||||| ||||| || |||||||| || |||||||| ||||| ||||| | ||| Sbjct 19879135 GCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGC 19879076 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 |||| | ||||| ||| | ||| | || | |||||||| | || || || || Sbjct 19879075 TTCTGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATC 19879016 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATG-TGCTTAATAAAttttttttCGTTTTCTGACAACT 13619 ||| || ||||| ||||| | ||| || |||||| | | | || || || Sbjct 19879015 ACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGG 19878956 Query 13620 TTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAA 13679 || ||| | | ||| | || || | | ||||||||| | |||||||| ||||| Sbjct 19878955 TTTCCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCT 19878896 Query 13680 CAGCCTTCTTATACATCATCCATATATC 13707 | ||||||||||||||| ||| || || Sbjct 19878895 CTGCCTTCTTATACATCTGCCAGATGTC 19878868 >seq4 Length=130910915 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || ||||| || || || |||||||| |||| ||| || Sbjct 34847657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 34847598 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| || Sbjct 34847597 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 34847538 Query 13295 ATCAACCTTTCACC 13308 | || |||||| || Sbjct 34847537 ACCACCCTTTCCCC 34847524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 12970 TTCTAGTAA-CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCA 13028 |||| |||| |||||||||||| |||||||| || ||||||||||| ||| |||| |||| Sbjct 34850270 TTCT-GTAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAATTCA 34850212 Query 13029 TTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 |||| || | || |||| |||||||||||||| Sbjct 34850211 TTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 34850175 >seq3 Length=132848913 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || ||||| || || | | |||||||||||| ||||| || |||||||| || |||||| Sbjct 126363350 ATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 126363409 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || ||||| ||||| | ||| || | | ||||||||| Sbjct 126363410 AAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTC 126363447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979180157426