Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq5 100 2e-16 >seq6 Length=170843587 Score = 104 bits (114), Expect = 2e-17 Identities = 284/425 (67%), Gaps = 9/425 (2%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| ||| | | | || |||| | ||||| ||||| | | ||| |||| Sbjct 62494951 TGGGAAAGGCCTTGGTC-CTCACTGAAGCTCTATTTTCAGTGGTTCAATGCGATTCAGGC 62494893 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | | || | |||| |||||| |||| ||| | ||| || || || | || | Sbjct 62494892 CAATGCGGGCATGTCCCGAAGTGTGTTCAAAGTCTATGGCTTC-AGGCCTGTGATGTGTG 62494834 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 |||||||| ||||| | ||||||||| ||||| ||| | || || | ||||||| Sbjct 62494833 GGATCATGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAGTGCACGCCCAGACCCATGT 62494774 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | ||||||| |||||| ||||| | || ||||| | | | ||| ||| |||| || Sbjct 62494773 C-CCCCGACTCCTGGTACAGCTGGTAGGACAGCTC--CCT-GTTCA-GTAGAACTTGCAA 62494719 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | ||||| |||| | | | | | | || | ||||| || | ||| || |||| | Sbjct 62494718 AGGGTGTGGCACAGGGCAGGGGGCTTGAGAGGGAGCTCTTTGGGATCCCAAGCACACAGG 62494659 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| || | |||| |||| ||| | |||||||| || || Sbjct 62494658 ATGATTCTTCTGTCCTCAGAGTTGCTTTTGATTGTGTCCTTACT-TTTTGCAGTTGGTCT 62494600 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || || ||||| |||| |||| || |||| | || || |||| ||||||| Sbjct 62494599 ACTCCTTGGCCTGAGTAATCTGAATTCATATCTTTGTATGCAGC-CCAAAATGCCTCCAC 62494541 Query 25807 TGGAA 25811 || || Sbjct 62494540 TGAAA 62494536 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 105645769 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGTCCCATG 105645828 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||||| |||||| | ||| || || ||||| | | |||||| ||||| || Sbjct 105645829 T-CTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTACCACGTAGAACTGGCA 105645887 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| || || || || || || Sbjct 105645888 AAGGGCATGGCATGGGGGGAGGGCCATGAG 105645917 >seq5 Length=104526007 Score = 100 bits (110), Expect = 2e-16 Identities = 216/313 (69%), Gaps = 15/313 (5%) Strand=Plus/Plus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 ||||||| || || || | || |||| | |||||||| || ||| | ||| ||| Sbjct 23434251 GGAAAGGC-CTTGGTTCTCCCTGAAGCTTCATTTTCAGCGGCTCAGTGTGGTTCAGATAG 23434309 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 ||||| || | ||||| || ||| ||||| || ||| | | || || ||||||| | Sbjct 23434310 ACGTGTGCATATCCCAAAGCGTGTACAAAGTCGCCCAGCTTCAGACCTGTAACGTGTGTG 23434369 Query 25509 ATCATGTACGTGAGGAGAAAG-TAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 ||| |||| ||||| || || |||||| |||||| ||||| || || | |||| || Sbjct 23434370 ATCGTGTAGGTGAGCAGGGAGGTAGCTGCTGATGTTGAAGGGCACACCCAGGACCATCTC 23434429 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG-TCGCTCACGTAAAACTGACAC 25626 || |||||||| || ||||| || | ||||| | || || || | ||||| || Sbjct 23434430 CC---GACCTCTGATATAGCTGGCAGGGCAGCTCACAGTTCACT-ACACAGAACTGGCAA 23434485 Query 25627 ATGGTGTAGCAC--GGAGGA-AGAGCTATAAGGCC-CAAG----TCTTTAGGGTTCCAGG 25678 | || | |||| | || | || | | | |||| |||| ||||| || ||||| | Sbjct 23434486 AGGGCGAGGCACAGGCAGCAGAGTGGGAGAGGGCCACAAGAAGATCTTTTGGATTCCAAG 23434545 Query 25679 CGCACACGATGAT 25691 | |||| |||||| Sbjct 23434546 CACACAGGATGAT 23434558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340135058853249