Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 2e-13 >seq12 Length=61602749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| || |||||| | ||||| || | ||| |||| ||||| ||||| ||||| || Sbjct 17547550 TTAGGTTGCAAACATGTTAAAGGCATCCTGTTATATGGGCCTCCAGGTTGTGGTAAGACG 17547609 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAAT 164616 | |||||||| |||| |||| | || ||| | || || ||| | || ||| Sbjct 17547610 CTGTTGGCTCGACAGATTGG-CAAGATGTTGAATGCAAGAGAACCC--AAAGTGGTCAAT 17547666 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || || ||||| |||||| || | || ||||| Sbjct 17547667 GGGCCAGAAATCCTCAACAAATATGTGGGAGAATCAGAGGCTAATATTCGTAAACTGTTT 17547726 Query 164677 CAGGAGGCTGAAGAAGAACA 164696 || |||||||| || || Sbjct 17547727 GCTGATGCTGAAGAGGAGCA 17547746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595867434130800