Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 9e-13 seq12 86.0 3e-12 seq223 82.4 4e-11 >seq7 Length=121844099 Score = 87.8 bits (96), Expect = 9e-13 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| ||| |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 21307471 AAAAGTCAGGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 21307530 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACG 11536 |||| |||||||||||||| ||||| || || Sbjct 21307531 CTCTAACCAACTGAGCTAACCGGCCGCCGCCG 21307562 Score = 87.8 bits (96), Expect = 9e-13 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| ||| |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 21320786 AAAAGTCAGGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 21320727 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACG 11536 |||| |||||||||||||| ||||| || || Sbjct 21320726 CTCTAACCAACTGAGCTAACCGGCCGCCGCCG 21320695 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11447 AAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||||| |||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 21556648 AAATCAAAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 21556589 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 21556588 TCTAACCAACTGAGCTAACCGGCC 21556565 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21270148 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21270207 Query 11528 CCG 11530 ||| Sbjct 21270208 CCG 21270210 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21012727 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21012668 Query 11528 CC 11529 || Sbjct 21012667 CC 21012666 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21255260 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21255319 Query 11528 CC 11529 || Sbjct 21255320 CC 21255321 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21296555 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21296496 Query 11528 CC 11529 || Sbjct 21296495 CC 21296494 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21309472 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21309413 Query 11528 CC 11529 || Sbjct 21309412 CC 21309411 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21318787 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21318846 Query 11528 CC 11529 || Sbjct 21318847 CC 21318848 >seq12 Length=61602749 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||| ||| |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 53403733 AAGAAAAGAAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 53403674 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 53403673 GCTCTAACCAACTGAGCTAACCGGCC 53403648 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 53427624 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 53427683 Query 11528 CC 11529 || Sbjct 53427684 CC 53427685 >seq223 Length=3843259 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1115576 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1115517 Query 11528 CC 11529 || Sbjct 1115516 CC 1115515 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489246415588